Alineamiento de SLA/LP de Drosophila contra B.Bigemina
TBLASTN 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|45550694|ref|NP_649556.2| CG1427 CG1427-PA, isoform A
[Drosophila melanog
(448 letters)
Database: B_bigemina.contigs.fa
4396 sequences; 19,733,690 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Contig3744 33 0.31
Contig3897 33 0.33
Contig3683.0 32 0.60
Contig2932 32 0.79
Contig854 32 0.81
Contig1362 31 0.88
Contig846 31 0.97
>Contig3744
Length = 5928
Score = 32.7 bits (73), Expect = 0.31, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Frame = +3
Query: 113 LLARLTNALI--LDLIRGIGLPSC-----AGCFL--VPMCTGMTLTLCLQSLRKRRPGAR 163
L+ARLT L L L G LP C A C + + +C G +L LCL + PGAR
Sbjct: 2316 LVARLTLRLCASLALCLGARLPLCLVASLARCLVASLALCPGASLALCLVACLALWPGAR 2495
Query: 164 YVLWSRIDQKSCFKAITATGLVPVVIPCLI 193
L+ C A LV CL+
Sbjct: 2496 LALFLVARLARCLVARLTRCLVASSTRCLV 2585
>Contig3897
Length = 12828
Score = 32.7 bits (73), Expect = 0.33, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Frame = -2
Query: 123 LDLIRGIGLPSCAGCFL-------VPMCTGMTLTLCLQSLRKRRPGARYVLWSRIDQKSC 175
L L G LP C G L + +C G L LCL + R GAR L S +D
Sbjct: 5594 LALCLGARLPLCLGACLALCLVASLALCLGARLALCLGARSTRCLGARLALSSIVDSSLN 5415
Query: 176 FKAITATG 183
AI TG
Sbjct: 5414 LNAIQFTG 5391
>Contig3683.0
Length = 4137
Score = 32.0 bits (71), Expect = 0.60, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 31/69 (44%)
Frame = -3
Query: 131 LPSCAGCFLVPMCTGMTLTLCLQSLRKRRPGARYVLWSRIDQKSCFKAITATGLVPVVIP 190
LP C C +P C G TLTLCL GAR L C +A A LV +
Sbjct: 3607 LPLCL-CASLPRCLGATLTLCL--------GARSTLCLGASLPLCLRARLAPCLVARLAL 3455
Query: 191 CLIKGESLN 199
CL+ +L+
Sbjct: 3454 CLVASLALS 3428
>Contig2932
Length = 11681
Score = 31.6 bits (70), Expect = 0.79, Method: Composition-based stats.
Identities = 34/106 (32%), Positives = 42/106 (39%), Gaps = 5/106 (4%)
Frame = -1
Query: 132 PSCAGCFLVPMCTGMTLTLCLQSLRKRRPGARYVLWSRIDQKSCFKAITATGLVPVVIPC 191
P C G +C G TLT CL + GA L C A +A LV + C
Sbjct: 6803 PLCLGAS-SALCLGATLTRCLVASLALCLGASSALCLVARSPRCLSARSALSLVASLPLC 6627
Query: 192 LIKGESLNTNVDLFREKIKS----LGVDSILCL-YTTTSCFAPRNS 232
L +L L R + S LG S LCL T T C R++
Sbjct: 6626 LDASLALCLGATLTRCLVASLALCLGASSALCLGATLTLCLGARST 6489
>Contig854
Length = 2089
Score = 31.6 bits (70), Expect = 0.81, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Frame = -3
Query: 112 TLLARLTNALI--LDLIRGIGLPSCAGCFLVPMCTGMTLTLCLQSLRKRRPGARYVLWSR 169
+LLARLT L+ L L L C G L P+C G TLCL + GAR L
Sbjct: 782 SLLARLTRCLVASLALCLCARLALCLGASL-PLCLGAWSTLCLGASLALCLGARLALCLG 606
Query: 170 IDQKSCFKAITATGLVPVVIPCLI 193
C A A LV + CL+
Sbjct: 605 ASLPRCLVARLALCLVARLPRCLV 534
>Contig1362
Length = 9418
Score = 31.2 bits (69), Expect = 0.88, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 30/67 (44%)
Frame = -3
Query: 132 PSCAGCFLVPMCTGMTLTLCLQSLRKRRPGARYVLWSRIDQKSCFKAITATGLVPVVIPC 191
P+ C +P+C G +LTLCL + GAR L C A + LV + C
Sbjct: 6365 PNDGSCASLPLCLGASLTLCLGASLALCLGARLALCLGASLPLCLVACLSR*LVASLARC 6186
Query: 192 LIKGESL 198
L+ +L
Sbjct: 6185 LVASLAL 6165
>Contig846
Length = 1960
Score = 31.2 bits (69), Expect = 0.97, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -1
Query: 113 LLARLTNALILDLIRGIG--LPSCAGCFLVPMCTGMTLTLCLQSLRKRRPGARYVL 166
L+A L L+ L R +G LP C G L P C G +L LCL + R GA L
Sbjct: 934 LIASLPLCLVASLPRCLGACLPRCLGARL-PRCLGASLALCLSASLPRCLGASLAL 770
Database: B_bigemina.contigs.fa
Posted date: Feb 28, 2008 11:56 AM
Number of letters in database: 19,733,690
Number of sequences in database: 4396
Lambda K H
0.320 0.136 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4396
Number of Hits to DB: 10,559,300
Number of extensions: 167152
Number of successful extensions: 1271
Number of sequences better than 1.0: 30
Number of HSP's gapped: 1178
Number of HSP's successfully gapped: 31
Length of query: 448
Length of database: 6,577,896
Length adjustment: 100
Effective length of query: 348
Effective length of database: 6,138,296
Effective search space: 2136127008
Effective search space used: 2136127008
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 43 (21.2 bits)