Alineamiento TR3
Query= SPP00000036_1.0 # Protein # Thioredoxin reductase 3 (TR3) #
Homo sapiens # Complete
(754 letters)
Database: B_bigemina.contigs.fa
4396 sequences; 19,733,690 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Contig4075 192 8e-98
Contig3884 70 5e-12
Contig4130 49 1e-05
Contig4072 35 0.094
Contig4100.1 35 0.17
Contig505 34 0.22
Contig1333 32 0.72
Contig3285 32 0.72
Contig4178 32 0.96
Contig4132 32 0.96
>Contig4075
Length = 25623
Score = 192 bits (487), Expect(3) = 8e-98, Method: Composition-based stats.
Identities = 113/278 (40%), Positives = 165/278 (59%), Gaps = 2/278 (0%)
Frame = +2
Query: 355 TMTKAIQNHISSLNWGYRLSLREKAVAYVNSYGEFVEHHKIKATNKKGQETYYTAAQFVI 414
T+ + +QN+I LN+ YR L K V YVN+ + + + T+KKG++ A +I
Sbjct: 19268 TLRQTVQNYIKMLNFSYRSGLMSKNVEYVNAMASLADKNTVTYTDKKGEKHQIKAKNVLI 19447
Query: 415 ATGERPRYLG-IQGDKEYCITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGFGLDVTV 473
A G RP ++G +Y ITSDDL S GKTL+VG S+VALECAGFL G DVTV
Sbjct: 19448 AIGARPTIPSDVKGAWDYSITSDDLMSRKEPVGKTLIVGGSFVALECAGFLTSMGYDVTV 19627
Query: 474 MVRSILLRGFDQEMAEKVGSYMEQHGVKFLRKFIPVMVQQLEKGSPGKLKVLAKSTEGTE 533
VRS++LRGFD++ A+KV M G KF +P + +LE G ++ + T+G+
Sbjct: 19628 AVRSLILRGFDRQCADKVQELMLATGTKFKNGVVPQAITKLENG-----RLYIEFTDGSS 19792
Query: 534 TIEGVYNTVLLAIGRDSCTR-KIGLEKIGVKINEKSGKIPVNDVEQTNVPYVYAVGDILE 592
++T++ A GR +R + L +G+K +E GKI D +T+V VYAVGD++E
Sbjct: 19793 D---EFDTLMYATGRSVSSRMQKELSDVGIKFSE-YGKIIAED-GKTSVEGVYAVGDVVE 19957
Query: 593 DKPELTPVAIQSGKLLAQRLFGASLEKCDYINVPTTVF 630
P L PVA++ G+LLA+R+FG S +K ++ T F
Sbjct: 19958 GNPALAPVAVKDGELLARRIFGNSDKKVGFVVSHATNF 20071
Score = 108 bits (269), Expect(3) = 8e-98, Method: Composition-based stats.
Identities = 57/134 (42%), Positives = 77/134 (57%), Gaps = 14/134 (10%)
Frame = +3
Query: 625 VPTTVFTPLEYGCCGLSEEKAIEVYKKENLEIYHTLFWPLEWTVAGREN----------- 673
+P VFTP EY CG+SEE A ++Y E+ ++Y + LE+ RE
Sbjct: 20091 IPMCVFTPYEYARCGISEETASKLYG-EDFDVYLKEYTTLEFAAVHREKVESLRADEFDV 20267
Query: 674 ---NTCYAKIICNKFDHDRVIGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTC 730
TC +K+IC K V+G H +GPNAGE+ QG A++ G+TK+ +DDTIGIHPT
Sbjct: 20268 DMPPTCLSKMICKK--DGTVVGLHFVGPNAGEIMQGLCMAVRKGITKEEIDDTIGIHPTD 20441
Query: 731 GEVFTTLEITKSSG 744
E F L +TK SG
Sbjct: 20442 AESFVNLTVTKKSG 20483
Score = 98.2 bits (243), Expect(3) = 8e-98, Method: Composition-based stats.
Identities = 52/86 (60%), Positives = 63/86 (73%)
Frame = +3
Query: 268 YDLIIIGGGSGGLSCAKEAAILGKKVMVLDFVVPSPQGTSWGLGGTCVNVGCIPKKLMHQ 327
YD +IGGG GGL+ AKEAA LG K ++ D+V PSP+GT+WGLGGTCVNVGCIPKKLMH
Sbjct: 18972 YDFAVIGGGCGGLAAAKEAASLGAKTILFDYVRPSPRGTTWGLGGTCVNVGCIPKKLMHY 19151
Query: 328 AALLGQALCDSRKFGWEYNQQVRHNW 353
A +LG + D GW N + H+W
Sbjct: 19152 AGILGHSSHDREALGWG-NHEGPHDW 19226
>Contig3884
Length = 22305
Score = 69.7 bits (169), Expect = 5e-12, Method: Composition-based stats.
Identities = 69/255 (27%), Positives = 117/255 (45%), Gaps = 4/255 (1%)
Frame = +2
Query: 484 DQEMAEKVGSYMEQHGVKFLRKFIPVMVQQLEKGSPGKLKVLAKSTEGTETIEGVYNTVL 543
DQ+++ + +E+ G++ + V + L + V+ G + IE + VL
Sbjct: 3725 DQDVSATIKKLIEKQGIE-----VSVSTKVLGGEAKEDCAVVTAEKNG-QKIEFKGDVVL 3886
Query: 544 LAIGRDSCTRKIGLEKIGVKINEKSGKIPVND-VEQTNVPYVYAVGDILEDKPELTPVAI 602
LA+GR T +GLE +G+K + G I V+D + N P + A+GD++ P L A
Sbjct: 3887 LAMGRRPFTSNLGLENLGIKT--ERGCIVVDDKLRIPNHPNISAIGDVIPG-PMLAHKAE 4057
Query: 603 QSGKLLAQRLFGASLEKCDYINVPTTVFTPLEYGCCGLSEE--KAIEV-YKKENLEIYHT 659
+ G + + G L ++ +VP ++T E G +E+ KA V YKK +
Sbjct: 4058 EDGSVALGNILGKDLGHVNWNHVPMVIYTHPEVAGVGSTEQSLKAAGVAYKKASFPFAAN 4237
Query: 660 LFWPLEWTVAGRENNTCYAKIICNKFDHDRVIGFHILGPNAGEVTQGFAAAMKCGLTKQL 719
VAG + + KI+ + + ++++G I+GP A E+ M CGLT
Sbjct: 4238 S----RSRVAGETDG--FVKILAD--NDNKILGGWIIGPQASELIGQITLMMACGLTTVD 4393
Query: 720 LDDTIGIHPTCGEVF 734
+ HPT E
Sbjct: 4394 VSKVCFAHPTISEAL 4438
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/58 (46%), Positives = 33/58 (56%)
Frame = +2
Query: 268 YDLIIIGGGSGGLSCAKEAAILGKKVMVLDFVVPSPQGTSWGLGGTCVNVGCIPKKLM 325
YDL +IGGG GG + A + A G KV +D LGGTC+NVGCIP K +
Sbjct: 2819 YDLAVIGGGPGGYTTAIKGAQHGLKVACID--------RRKTLGGTCLNVGCIPSKCL 2968
>Contig4130
Length = 53027
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/157 (26%), Positives = 75/157 (47%), Gaps = 1/157 (0%)
Frame = -1
Query: 484 DQEMAEKVGSYMEQHGVKFLRKFIPVMVQQLEKGSPGKLKVLAKSTEGTETIEGVYNTVL 543
DQ+++ + +E+ G++ + V + L + V+ G + IE + VL
Sbjct: 452 DQDVSATIKKLIEKQGIE-----VSVSTKVLGGEAKEDCAVVTAEKNG-QKIEFKGDVVL 291
Query: 544 LAIGRDSCTRKIGLEKIGVKINEKSGKIPVND-VEQTNVPYVYAVGDILEDKPELTPVAI 602
LA+GR T +GLE +G+K + G I V+D + N P + A+GD++ P L A
Sbjct: 290 LAMGRRPFTSNLGLENLGIKT--ERGCIVVDDKLRIPNHPNISAIGDVIPG-PMLAHKAE 120
Query: 603 QSGKLLAQRLFGASLEKCDYINVPTTVFTPLEYGCCG 639
+ G + + G L ++ +VP ++T E G
Sbjct: 119 EDGSVALGNILGKDLGHVNWNHVPMVIYTHPEVAGVG 9
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/58 (46%), Positives = 33/58 (56%)
Frame = -1
Query: 268 YDLIIIGGGSGGLSCAKEAAILGKKVMVLDFVVPSPQGTSWGLGGTCVNVGCIPKKLM 325
YDL +IGGG GG + A + A G KV +D LGGTC+NVGCIP K +
Sbjct: 1358 YDLAVIGGGPGGYTTAIKGAQHGLKVACID--------RRKTLGGTCLNVGCIPSKCL 1209
>Contig4072
Length = 50453
Score = 35.4 bits (80), Expect = 0.094, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 36/85 (42%), Gaps = 28/85 (32%)
Frame = +2
Query: 97 RFVSRPGRARSESETLERSPPQSPG--PGKAGDAPNRRSG-----------HVRGARV-- 141
R + RPG AR E + P Q PG PG+A A RRSG + RG V
Sbjct: 24458 RRIWRPGEARLAGE---KYPAQGPGRGPGEAAGADRRRSGRYRPQQKAAETYARGMTVTA 24628
Query: 142 -------------LSPPGRRARLSS 153
+SPP RR RLS+
Sbjct: 24629 VRRRRETRRTAGRVSPPARRPRLSA 24703
>Contig4100.1
Length = 40200
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 43/193 (22%), Positives = 72/193 (37%), Gaps = 5/193 (2%)
Frame = +3
Query: 47 AGDPISHARGGVGGRGERLPRGFARVVRVASEGSVR---RPSGPVPAPQPPAFRFVSRPG 103
GD ++ + V RG RV +G V R +G V +P P+F PG
Sbjct: 14535 GGDGVTDRKQDVNTRG--------RVNTEEQQGGVANMLRSTGIVLSPSEPSFTL--NPG 14684
Query: 104 RARSESETLERSPPQSPGPGKAGDAPNRRSGHV--RGARVLSPPGRRARLSSPGPSRSSE 161
R RS + TL +P GD+ R+ + R ++P R S G ++
Sbjct: 14685 RQRSTNPTLSGKSASAPNSDAFGDSEGTRAATIAQRDPAAIAPSSTRDNSSGDGLRETAS 14864
Query: 162 AREELRRHLVGLIERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEV 221
R G S V+ S + + V + G ++ D + G +
Sbjct: 14865 QRG-------GDSSVSSVMPISSRFPDNENSVLNTQTPKGPSVQLITSDTIRQGGTGSKP 15023
Query: 222 LSEITNQKTVPNI 234
SE ++ +P++
Sbjct: 15024 ESEAEPKQGIPDV 15062
>Contig505
Length = 1333
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 11/86 (12%)
Frame = +2
Query: 86 GPVPAPQPPAFRFVSRPGR--ARSESETLERSPPQSPGPGKAGDAPN-------RRSGHV 136
G P PPA F RP + S E L +PP P K G PN +++ +
Sbjct: 848 GGKKTPHPPADFFGRRPPPRPSISREEIL*TTPPPRDHPLKKGAPPNNTHPRATKKNPYT 1027
Query: 137 RGARVLSPPGRRAR--LSSPGPSRSS 160
RG + SPP R + P P +S+
Sbjct: 1028RGVNLFSPPHNTQR*TKTKPRPEKST 1105
>Contig1333
Length = 1827
Score = 32.3 bits (72), Expect = 0.72, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +3
Query: 5 HRLVSGKRRMHLTSRP---VASTHSPLILDMCPHLNNGPMTGCG 45
H +V G R++H+ + +A + + L + PHL NG TGC
Sbjct: 234 HSIVQGVRQLHVDDQAAVYMAQRRTLVTLPLLPHLRNGWQTGCA 365
>Contig3285
Length = 7026
Score = 32.3 bits (72), Expect = 0.72, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = -3
Query: 5 HRLVSGKRRMHLTSRP---VASTHSPLILDMCPHLNNGPMTGCG 45
H +V G R++H+ + +A + + L + PHL NG TGC
Sbjct: 1546 HSIVQGVRQLHVDDQAAVYMAQRRTLVTLPLLPHLRNGWQTGCA 1415
>Contig4178
Length = 124204
Score = 32.0 bits (71), Expect = 0.96, Method: Composition-based stats.
Identities = 33/113 (29%), Positives = 40/113 (35%), Gaps = 12/113 (10%)
Frame = +3
Query: 48 GDPISHARGGVGGRGERLPRGFAR------------VVRVASEGSVRRPSGPVPAPQPPA 95
G + ARG G E LPRG R V R+A RRP P P
Sbjct: 122688 GAAVEGARGCGGSCSEHLPRGAQRGDDPSHAYQLVAVRRLARPQDYRRPRVEPAQPAGPC 122867
Query: 96 FRFVSRPGRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRR 148
R SR G SE + + +A + R GH RG + P R
Sbjct: 122868 GRVASREG---SEVRHVGGDA*AAAAVPQAPASRVSREGHARGTGFVRPESGR 123017
>Contig4132
Length = 50512
Score = 32.0 bits (71), Expect = 0.96, Method: Composition-based stats.
Identities = 36/105 (34%), Positives = 43/105 (40%), Gaps = 1/105 (0%)
Frame = +1
Query: 74 RVASEGSVRRPSGPVPAPQPPAFRFVSRPGRARSESETLERSPPQSPGPGKAGDAPNRRS 133
R GSVRR +G F S PG + S RSPP + P+RRS
Sbjct: 40111 RPCPRGSVRRTTGG--GAMSRRFGRCS*PGVSHPRSRRTTRSPPAT*------TLPSRRS 40266
Query: 134 GHVRGARVLSPP-GRRARLSSPGPSRSSEAREELRRHLVGLIERS 177
R +L PP G A SP SR A +R+H L RS
Sbjct: 40267 TPCRYRAILKPPHGPTASAGSPC-SRVPSAGLRIRKHTGPLCWRS 40398