TBLASTN 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= SPP00000038_1.0 # Prot # Eukaryotic elongfactor (eEFSec) # Hs (596 letters) Database: genome.fa 4921 sequences; 228,543,505 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value supercont1.47 of Phytophthora infestans 288 5e-77 supercont1.6 of Phytophthora infestans 70 3e-11 supercont1.10 of Phytophthora infestans 70 3e-11 supercont1.19 of Phytophthora infestans 66 6e-10 supercont1.46 of Phytophthora infestans 55 1e-06 supercont1.7 of Phytophthora infestans 55 1e-06 supercont1.14 of Phytophthora infestans 48 1e-04 supercont1.139 of Phytophthora infestans 44 0.002 supercont1.30 of Phytophthora infestans 35 0.80 supercont1.4 of Phytophthora infestans 35 1.2 supercont1.25 of Phytophthora infestans 35 1.4 >supercont1.47 of Phytophthora infestans Length = 1151883 Score = 288 bits (737), Expect = 5e-77, Method: Composition-based stats. Identities = 200/564 (35%), Positives = 299/564 (53%), Gaps = 27/564 (4%) Frame = -3 Query: 15 HIDSGKXXXXXXXXXXXXXXXFDKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXX 74 H+DSGK DK PQS++RGITLDLGFS F + +++ S Sbjct: 529465 HVDSGKTSLVRALSTQLSTAALDKHPQSQQRGITLDLGFSSFRLQPLDQVKPSL------ 529304 Query: 75 XXXXXXXXXXXXQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIG 134 QVTLVDCPGHASL RTI+GG IID ++LV+D KG+Q Q+ E L++ Sbjct: 529303 ------------QVTLVDCPGHASLFRTILGGVAIIDTVLLVVDCRKGLQAQTIESLLLA 529160 Query: 135 Q-IACQKLVVVLNKIDLLPE--GKRQAAIDKMTKKMQKTLENTKFR-----GAPIIPVXX 186 IA ++++V L K DLLP +R ID +T ++ +T T F P++PV Sbjct: 529159 SLIAERRVIVALTKTDLLPSVASERTKVIDAVTHEI-RTFLATHFNFQNKAPIPVVPVAV 528983 Query: 187 XXXXXXXXXXXXXXXIPELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTIL 246 I +L+E+L++ + +P RD SG F ++VDHCF++ G GTV+TGT+L Sbjct: 528982 GSGQEPQG-------IQQLLEVLSANLQVPERDTSGAFRLAVDHCFAVPGNGTVLTGTVL 528824 Query: 247 SGSISLGDSVEIPALKVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGL-VCA 305 +G++ GD +E+ + V KVK++Q+F + QGDR+G+ V DP L+ER + V Sbjct: 528823 AGTLQKGDEIELLPIGVKTKVKTLQVFKHDVDRCTQGDRVGVRVNGLDPALVERAMAVSP 528644 Query: 306 PESLHTVHAALISVEKIPYFRGPL-QTKAKFHITVGHETVMGRLMFFSPAPDNFDQEPIL 364 P SL V +I V +P+FRG + ++ AK H+TVGH TVM FFS N Sbjct: 528643 PGSLTPVTQVIIPVTPVPFFRGAVCKSGAKCHVTVGHTTVMATFTFFSRLGRNKKS---- 528476 Query: 365 DSFNFSQEYLFQEQYLSKDLTPAVTDNDEADK---KAG-QATEGHCPRQQWALVEFEKPV 420 + F L++ V+D D +K KAG ++T+G +AL++ E V Sbjct: 528475 -NVEFDPSALYE----------YVSDLDFGEKRPEKAGNESTKGD--STIFALLQLEHAV 528335 Query: 421 TCPRLCLVIGSRLDADIHTNTCRLAFHGIL----------LHGLEDRNYADSFLPRLKVY 470 CP LV+ SRLD D +CRLAF+G + L+ L + L L+V Sbjct: 528334 YCPPKALVVCSRLDLDAKRFSCRLAFYGSVECVVSATTDELNALRGVYPSVVGLEDLQVG 528155 Query: 471 KLKHKHGLVERAMDDY-SVIGRSLFKKETNIQLFVGLKVHLSTGE-LGIIDSAFGQSGKF 528 ++K + GLV++ + VIGR LF K+ ++ +V + LG I FG++GKF Sbjct: 528154 RVKSRDGLVDKVAEGAGEVIGRDLFSKDVKWSVYQNSEVLFEQAQVLGTILGPFGKAGKF 527975 Query: 529 KIHIPGGLSPESKKI-LTPALKKR 551 +I + + +KK+ L P +++ Sbjct: 527974 RIALLPDSTTRAKKLQLLPVPREK 527903 >supercont1.6 of Phytophthora infestans Length = 4722445 Score = 70.5 bits (171), Expect = 3e-11, Method: Composition-based stats. Identities = 66/283 (23%), Positives = 111/283 (39%), Gaps = 13/283 (4%) Frame = +1 Query: 36 FDKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPG 95 D RERGIT+D+ F P T++D PG Sbjct: 1691983 LDNLKAERERGITIDIALWKFESP-------------------------KYFFTVIDAPG 1692087 Query: 96 HASLIRTIIGGAQIIDLMMLVI---------DVTKGMQTQSAECLVIGQIACQKLVVVLN 146 H I+ +I G D +LV+ ++K QT+ L + ++++V +N Sbjct: 1692088 HRDFIKNMITGTSQADCAILVVASGVGEFEAGISKEGQTREHALLAF-TLGVKQMIVAIN 1692264 Query: 147 KIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGA--PIIPVXXXXXXXXXXXXXXXXXI-- 202 K+D QA +++ ++ L+ ++ A P +P+ Sbjct: 1692265 KMDDSSVMYGQARYEEIKSEVTTYLKKVGYKPAKIPFVPISGWEGDNMIDRSTNMPWYKG 1692444 Query: 203 PELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALK 262 P L+E L ++ P R P + + + I G GTV G + +G I G + Sbjct: 1692445 PFLLEAL-DNLNAPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVATFGPVG 1692621 Query: 263 VVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCA 305 + +VKS++M H + A+ GD +G V K L RG V + Sbjct: 1692622 LSTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKELRRGFVAS 1692750 >supercont1.10 of Phytophthora infestans Length = 3761764 Score = 70.5 bits (171), Expect = 3e-11, Method: Composition-based stats. Identities = 66/283 (23%), Positives = 111/283 (39%), Gaps = 13/283 (4%) Frame = +2 Query: 36 FDKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPG 95 D RERGIT+D+ F P T++D PG Sbjct: 153023 LDNLKAERERGITIDIALWKFESP-------------------------KYFFTVIDAPG 153127 Query: 96 HASLIRTIIGGAQIIDLMMLVI---------DVTKGMQTQSAECLVIGQIACQKLVVVLN 146 H I+ +I G D +LV+ ++K QT+ L + ++++V +N Sbjct: 153128 HRDFIKNMITGTSQADCAILVVASGVGEFEAGISKEGQTREHALLAF-TLGVKQMIVAIN 153304 Query: 147 KIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGA--PIIPVXXXXXXXXXXXXXXXXXI-- 202 K+D QA +++ ++ L+ ++ A P +P+ Sbjct: 153305 KMDDSSVMYGQARYEEIKSEVTTYLKKVGYKPAKIPFVPISGWEGDNMIDRSTNMPWYKG 153484 Query: 203 PELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALK 262 P L+E L ++ P R P + + + I G GTV G + +G I G + Sbjct: 153485 PFLLEAL-DNLNAPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVATFGPVG 153661 Query: 263 VVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCA 305 + +VKS++M H + A+ GD +G V K L RG V + Sbjct: 153662 LSTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKELRRGFVAS 153790 Score = 39.7 bits (91), Expect = 0.046, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 35/65 (53%) Frame = +3 Query: 87 QVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLN 146 + T +D PGH R AQ+ D ++L++ +G+ Q+ E + + A ++ +N Sbjct: 1193412 KATFLDTPGHFHFFRMRSSAAQVADAVLLIVAADEGVLLQTEESIGAIEEAGLPAIICIN 1193591 Query: 147 KIDLL 151 K+DLL Sbjct: 1193592 KVDLL 1193606 >supercont1.19 of Phytophthora infestans Length = 2398068 Score = 65.9 bits (159), Expect = 6e-10, Method: Composition-based stats. Identities = 55/203 (27%), Positives = 99/203 (48%), Gaps = 10/203 (4%) Frame = +2 Query: 87 QVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGM-QTQSAECLVIGQIA-CQKLVVV 144 V+ VDCPGH L+ T++ GA ++D +L++ + Q Q++E L +I Q ++++ Sbjct: 1195277 HVSFVDCPGHDILMATMLNGAAVMDAALLLVAGNEVCPQPQTSEHLAAIEIMRLQNIIIL 1195456 Query: 145 LNKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVXXXXXXXXXXXXXXXXXIPE 204 NK+DL+ K AA+ + ++++K + T APIIP+ + Sbjct: 1195457 QNKVDLI---KEDAAVAQH-EQIKKFVAGTVAHDAPIIPI----------SAVLKYNVDV 1195594 Query: 205 LIELLTSQISIPTRDPSGPFLMSVDHCFSIKG--------QGTVMTGTILSGSISLGDSV 256 + E + I +P RD + + V F + +G V G+IL G + +GD + Sbjct: 1195595 VCEYICRNIPVPKRDFTSKPKLIVIRSFDVNKPGEDVENLKGGVAGGSILEGVLRVGDEI 1195774 Query: 257 EIPALKVVKKVKSMQMFHMPITS 279 E+ +V K + +M +PI S Sbjct: 1195775 EVRP-GIVSKDEEGKMTCVPIFS 1195840 Score = 33.5 bits (75), Expect = 3.7, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 2/64 (3%) Frame = -3 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECL--VIGQIACQKLVVVL 145 + L+D PGH + ++ D ++V+D +G+ Q+ L IG+ K V+++ Sbjct: 197959 INLIDSPGHVDFSSEVTAALRVTDGALVVVDCIEGVCVQTETVLRQSIGERV--KPVLMV 197786 Query: 146 NKID 149 NK+D Sbjct: 197785 NKVD 197774 >supercont1.46 of Phytophthora infestans Length = 1163948 Score = 55.1 bits (131), Expect = 1e-06, Method: Composition-based stats. Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 5/104 (4%) Frame = +1 Query: 223 PFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVVKKV--KSMQMFHMPITSA 280 PFLM V+ FSI G+GTV++G + G I+ GD VE+ LK K ++MF + Sbjct: 873265 PFLMPVEDVFSISGRGTVVSGRVEQGIINTGDEVELVGLKPSTKTTCTGVEMFKKSLDRG 873444 Query: 281 MQGDRLGICVTQFDPKLLERGLV-CAPESL--HTVHAALISVEK 321 GD +G+ + + RG V C P ++ HT A + V K Sbjct: 873445 QAGDNVGLLLRGLKRDEVLRGQVLCKPGTINPHTKFEAEVYVLK 873576 >supercont1.7 of Phytophthora infestans Length = 4595942 Score = 54.7 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 70/288 (24%), Positives = 119/288 (41%), Gaps = 25/288 (8%) Frame = +3 Query: 87 QVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGM---------QTQSAECLVIGQIA 137 + T++D PGH S + +I GA D+ +LVI KG QT+ ++ + Sbjct: 2308794 RFTILDAPGHKSYVPNMIQGASQADVGILVISARKGEFETGFERGGQTRE-HAMLAKTLG 2308970 Query: 138 CQKLVVVLNKIDLLPEGKRQAAIDKMTKKMQKTLENTKF---RGAPIIPVXXXXXXXXXX 194 KL+VV+NK+D G Q D+ K++ L F R IPV Sbjct: 2308971 INKLIVVINKMDECNWG--QDRFDECVNKLRPFLRMCGFAVKRDVSFIPVSGLHGDNVKL 2309144 Query: 195 XXXXXXXIPELIELLTSQIS---IPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSIS 251 E L S + I R+P GP + + ++ + GT+ G + SG + Sbjct: 2309145 RVNTSKAPWYEGESLISHMDTLHIANRNPDGPTRVPILDRYAER--GTIALGKVESGILK 2309318 Query: 252 LGDSVEIPALKVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCA------ 305 G V + V + + P+ +A G+ + I ++ + + ++C Sbjct: 2309319 TGRKVLLMPTNATAVVNQVYINEQPVRTAKPGENVTIRLSCGLDDIQKGFVLCGTKEEAP 2309498 Query: 306 PESLHTVHAALISVEKIPYFRGPLQT---KAKFHI-TVGHETVMGRLM 349 P ++H A + V+ + + PL T K HI TV E V+ +L+ Sbjct: 2309499 PRAIHAFAAQIALVDTLEH--RPLLTAGYKCILHIHTVAQECVVAKLL 2309636 >supercont1.14 of Phytophthora infestans Length = 3113719 Score = 48.1 bits (113), Expect = 1e-04, Method: Composition-based stats. Identities = 55/260 (21%), Positives = 92/260 (35%), Gaps = 40/260 (15%) Frame = -1 Query: 37 DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96 D + R RG+T+D+G S F VTL+D PGH Sbjct: 2483950 DADEEERSRGVTMDVGTSHFET-------------------------ETKHVTLLDAPGH 2483846 Query: 97 ASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAE--------CLVIGQIACQKLVVVLNKI 148 I +I GA D+ +LV+ G + E L++ + ++VV +NK+ Sbjct: 2483845 RDFIPKMIAGAAQADVAVLVVPAVTGEFEAAFENSGQTKEHTLLVRSLGVAQMVVAVNKM 2483666 Query: 149 DLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPI--IPVXXXXXXXXXXXXXXXXXI---- 202 D++ K + D + + L+ FR + +P+ Sbjct: 2483665 DMVNWDKER--FDSIVTSLSMFLQGAGFRPKNLRFVPLSGITGANLEKTGGVDECSWYSG 2483492 Query: 203 PELIE--------------------------LLTSQISIPTRDPSGPFLMSVDHCFSIKG 236 P L+E +T + P R S PF M+V Sbjct: 2483491 PSLVEAIGK*TELWLVGRLKWG*HNNVKSL*TITDTFAPPQRQISKPFRMTVSDVSKSMS 2483312 Query: 237 QGTVMTGTILSGSISLGDSV 256 G ++G + +G+ ++GDSV Sbjct: 2483311 LGQTISGRVYAGAAAVGDSV 2483252 >supercont1.139 of Phytophthora infestans Length = 224363 Score = 44.3 bits (103), Expect = 0.002, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 6/90 (6%) Frame = +2 Query: 90 LVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNKID 149 ++D PGH S G+ + D+ +LV+D+ G++ Q+ E L + + VV LNKID Sbjct: 125492 VIDTPGHESFTNLRTRGSSLCDIAILVVDIMHGLEPQTLESLRLLRQKKAPFVVALNKID 125671 Query: 150 ------LLPEGKRQAAIDKMTKKMQKTLEN 173 +P+ Q A+ + + + E+ Sbjct: 125672 RCYGWKTMPDMPVQEALKHQNEHVIREFED 125761 >supercont1.30 of Phytophthora infestans Length = 2025055 Score = 35.4 bits (80), Expect = 0.80, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 15/101 (14%) Frame = -3 Query: 87 QVTLVDCPG------HASLIRTIIGGA----QIIDLMMLVIDVTKGMQTQSAEC----LV 132 Q++ D PG ++T++ A Q +DL MLV+D K + + + L Sbjct: 721829 QLSFYDTPGLIKPKESHEYVQTLVTAAAETLQGVDLSMLVVDSVKRLDESALQALEKVLT 721650 Query: 133 IGQIACQKLVVVLNKIDLLPEGKR-QAAIDKMTKKMQKTLE 172 C ++V+NK DL+ GKR Q +D TK++ + +E Sbjct: 721649 TSAQVCSPTMLVMNKYDLV--GKREQLNLDMKTKELSQMIE 721533 >supercont1.4 of Phytophthora infestans Length = 5137561 Score = 35.0 bits (79), Expect = 1.2, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 34/62 (54%) Frame = +3 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 + +VD PGHA + ++D ++LV+D T+G +Q+ L K +VV+NK Sbjct: 1458210 LNIVDTPGHADFGGEVERILSMVDGVVLVVDATEGPMSQTKFVLTKALHRGLKPLVVVNK 1458389 Query: 148 ID 149 +D Sbjct: 1458390 VD 1458395 >supercont1.25 of Phytophthora infestans Length = 2165783 Score = 34.7 bits (78), Expect = 1.4, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 24/41 (58%) Frame = -3 Query: 434 DADIHTNTCRLAFHGILLHGLEDRNYADSFLPRLKVYKLKH 474 +A+ +T C FHG L+ E+ N ADSF + KV +L H Sbjct: 1811103 NAEAYTRECSALFHGCLIFFYEESNLADSF-HKFKVTRLTH 1810984 Database: genome.fa Posted date: Feb 28, 2008 11:00 AM Number of letters in database: 228,543,505 Number of sequences in database: 4921 Lambda K H 0.321 0.137 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4921 Number of Hits to DB: 135,011,352 Number of extensions: 1912719 Number of successful extensions: 7099 Number of sequences better than 10.0: 12 Number of HSP's gapped: 7090 Number of HSP's successfully gapped: 14 Length of query: 596 Length of database: 76,181,168 Length adjustment: 120 Effective length of query: 476 Effective length of database: 75,590,648 Effective search space: 35981148448 Effective search space used: 35981148448 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 53 (25.0 bits)