TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000030_1.0 # Protein # Selenoprotein W1 (SelW1) # Hs
         (87 letters)

Database: genome.fa 
           4921 sequences; 228,543,505 total letters

Searching..................................................done

 ***** No hits found ******


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000031_1.0 # Protein # Selenoprotein W2 (SelW2) # Hs
         (115 letters)

Database: genome.fa 
           4921 sequences; 228,543,505 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercont1.5 of Phytophthora infestans                                 30   2.4  

>supercont1.5 of Phytophthora infestans
          Length = 4768765

 Score = 29.6 bits (65), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +2

Query: 83      FPYEKDLIEAIRRAS--NGETLEKITNSRPP 111
               FPY++D  EAI  A+  N E+L+  TN++ P
Sbjct: 3826637 FPYQQDTFEAIAVAAL*NIESLKMYTNTKEP 3826729


  Database: genome.fa
    Posted date:  Feb 28, 2008 11:00 AM
  Number of letters in database: 228,543,505
  Number of sequences in database:  4921
  
Lambda     K      H
   0.322    0.141    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4921
Number of Hits to DB: 40,459,178
Number of extensions: 380262
Number of successful extensions: 1570
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1570
Number of HSP's successfully gapped: 1
Length of database: 76,181,168
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)