TBLASTN 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= SPP00000026_1.0 # Protein # Selenoprotein U1 (SelU1) # Hs (229 letters) Database: genome.fa 4921 sequences; 228,543,505 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value supercont1.5 of Phytophthora infestans 32 2.0 supercont1.38 of Phytophthora infestans 32 2.9 supercont1.36 of Phytophthora infestans 32 2.9 >supercont1.5 of Phytophthora infestans Length = 4768765 Score = 32.3 bits (72), Expect = 2.0, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Frame = -1 Query: 75 AVIMAVRRPGCFLCREEAAD-LSSLKSMLDQLGVPLYAVVKEHIRTEVKDFQPYF 128 AVI AV RPGCF R AD + + + G+ Y V + PYF Sbjct: 4050769 AVITAVNRPGCFWVRLTLADPFRPFNAQIFKDGISKYTAVSSTL*IASSGNDPYF 4050605 >supercont1.38 of Phytophthora infestans Length = 1642046 Score = 31.6 bits (70), Expect = 2.9, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%) Frame = +3 Query: 75 AVIMAVRRPGCFLCREEAAD-LSSLKSMLDQLGVPLYAVVKEHIRTEVKDFQPY 127 AVI AV RP CFL R AD K+ + + G+ Y V + + PY Sbjct: 179787 AVITAVNRPECFLVRLTLADPFRPFKAQIFKGGISKYTAVSSTL*IASRGNDPY 179948 >supercont1.36 of Phytophthora infestans Length = 1665391 Score = 31.6 bits (70), Expect = 2.9, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%) Frame = +1 Query: 75 AVIMAVRRPGCFLCREEAAD-LSSLKSMLDQLGVPLYAVVKEHIRTEVKDFQPY 127 AVI AV RP CFL R AD K+ + + G+ Y V + + PY Sbjct: 1476664 AVITAVNRPECFLVRLTLADPFRPFKAQIFKGGISKYTAVSSTL*IASRGNDPY 1476825 TBLASTN 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= SPP00000027_1.0 # Protein # Selenoprotein U2 (SelU2) # Hs (226 letters) Database: genome.fa 4921 sequences; 228,543,505 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value supercont1.6 of Phytophthora infestans 30 6.1 >supercont1.6 of Phytophthora infestans Length = 4722445 Score = 30.4 bits (67), Expect = 6.1, Method: Composition-based stats. Identities = 14/22 (63%), Positives = 15/22 (68%) Frame = +3 Query: 150 LLSGSLQSLWRAVTGPLFDFQG 171 LL G LQSLWRAV PL+ G Sbjct: 2262528 LLQGELQSLWRAVGPPLWALPG 2262593 TBLASTN 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= SPP00000028_1.0 # Protein # Selenoprotein U3 (SelU3) # Hs (198 letters) Database: genome.fa 4921 sequences; 228,543,505 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value supercont1.2 of Phytophthora infestans 34 0.41 supercont1.7 of Phytophthora infestans 32 2.0 >supercont1.2 of Phytophthora infestans Length = 5928454 Score = 34.3 bits (77), Expect = 0.41, Method: Composition-based stats. Identities = 14/23 (60%), Positives = 17/23 (73%) Frame = -1 Query: 30 REHACVVAGLRRFGCVVCRWIAQ 52 RE CV AG RRF CV CRW+++ Sbjct: 5578900 REVRCVHAGSRRFCCVCCRWLSK 5578832 >supercont1.7 of Phytophthora infestans Length = 4595942 Score = 32.0 bits (71), Expect = 2.0, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 4/69 (5%) Frame = +1 Query: 4 VDLARVGACILKHAVTGEAVE---LRSLWREHACVVAGLRRFGCV-VCRWIAQDLSSLAG 59 V + R G+C L + G+ V+ L WR VV +R F CV C WI + SSL G Sbjct: 627187 VPVGRAGSCTLGNFRRGQVVKHECLGETWRWGRAVV--VRSFLCVRSCVWILSEYSSLVG 627360 Query: 60 LLDQHGVRL 68 + G+ L Sbjct: 627361 PGPRSGIWL 627387 Database: genome.fa Posted date: Feb 28, 2008 11:00 AM Number of letters in database: 228,543,505 Number of sequences in database: 4921 Lambda K H 0.322 0.140 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4921 Number of Hits to DB: 162,340,710 Number of extensions: 2412164 Number of successful extensions: 9851 Number of sequences better than 10.0: 9 Number of HSP's gapped: 9834 Number of HSP's successfully gapped: 10 Length of database: 76,181,168 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 49 (23.5 bits)