TBLASTN 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= SPP00000021_1.0 # Prot # Methionine-R-sufoxide reductase 1 (SelR1) # Hs (116 letters) Database: genome.fa 4921 sequences; 228,543,505 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value supercont1.2 of Phytophthora infestans 37 0.019 supercont1.1 of Phytophthora infestans 30 2.3 supercont1.127 of Phytophthora infestans 30 2.7 supercont1.39 of Phytophthora infestans 30 2.7 supercont1.11 of Phytophthora infestans 29 4.6 supercont1.60 of Phytophthora infestans 28 8.6 >supercont1.2 of Phytophthora infestans Length = 5928454 Score = 36.6 bits (83), Expect = 0.019, Method: Composition-based stats. Identities = 18/42 (42%), Positives = 25/42 (59%) Frame = +2 Query: 9 GEVFQNHFEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETI 50 GE +N E GVYVCA C +++S +K+ WPAF + I Sbjct: 197192 GEYNKNK-ETGVYVCAGCKTPVYTSTTKFDSGCGWPAFYDAI 197314 >supercont1.1 of Phytophthora infestans Length = 6928287 Score = 29.6 bits (65), Expect = 2.3, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 5/39 (12%) Frame = -2 Query: 23 CAKC-GYELFSSRSKYAHS----SPWPAFTETIHADSVA 56 C KC G+ L S+S + S PWP F+ TI + S+A Sbjct: 5342357 CVKCCGFRLTLSQSTFRRSI*WPCPWPKFSSTIRSPSLA 5342241 >supercont1.127 of Phytophthora infestans Length = 363187 Score = 29.6 bits (65), Expect = 2.7, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Frame = -1 Query: 9 GEVFQNHFEPGVYVCAKCGYELFSSRSKYAHSSPWPAF-TETIHADSVAKR 58 G V + + +Y C CG+ L + A W AF T T HA + A+R Sbjct: 30847 GVVLERNIRRSLYTCTICGFTLSRNSKPTAAQRRWSAFSTPTNHALASAER 30695 >supercont1.39 of Phytophthora infestans Length = 1432524 Score = 29.6 bits (65), Expect = 2.7, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Frame = +3 Query: 9 GEVFQNHFEPGVYVCAKCGYELFSSRSKYAHSSPWPAF-TETIHADSVAKR 58 G V + + +Y C CG+ L + A W AF T T HA + A+R Sbjct: 194646 GVVLERNIRRSLYTCTICGFTLSRNSKPTAAQRRWSAFSTPTNHALASAER 194798 >supercont1.11 of Phytophthora infestans Length = 3761121 Score = 28.9 bits (63), Expect = 4.6, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 31/69 (44%) Frame = -2 Query: 10 EVFQNHFEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRSEALKV 69 ++F+ F V V AKC ++L + + Y +S W F I D V+ HN L Sbjct: 1261715 QIFRWKFTINVTVSAKCEHQLANFKLDYLDNSKW--FVSIILFDVVSYATLHN----LLY 1261554 Query: 70 SCGKCGNGL 78 C C N L Sbjct: 1261553 ICITCWNYL 1261527 >supercont1.60 of Phytophthora infestans Length = 813645 Score = 27.7 bits (60), Expect = 8.6, Method: Composition-based stats. Identities = 9/19 (47%), Positives = 13/19 (68%) Frame = +1 Query: 8 GGEVFQNHFEPGVYVCAKC 26 G + ++ FEPG YVC +C Sbjct: 114121 GDKTIKSSFEPGQYVCERC 114177 TBLASTN 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= SPP00000022_1.0 # Prot # Methionine-R-sufoxide reductase 2 (SelR2) # Hs (199 letters) Database: genome.fa 4921 sequences; 228,543,505 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value supercont1.2 of Phytophthora infestans 74 4e-16 supercont1.7 of Phytophthora infestans 30 8.3 supercont1.220 of Phytophthora infestans 30 9.1 >supercont1.2 of Phytophthora infestans Length = 5928454 Score = 73.9 bits (180), Expect(2) = 4e-16, Method: Composition-based stats. Identities = 33/68 (48%), Positives = 46/68 (67%) Frame = +2 Query: 66 LAKSEWQKKLTPEQFYVTREKGTEPPFSGIYLNNKEAGMYHCVCCDSPLFSSEKKYCSGT 125 L+ EW+++LTP QF V R KGTE +G Y NKE G+Y C C +P+++S K+ SG Sbjct: 197108 LSNEEWKQRLTPMQFQVLRLKGTERAGTGEYNKNKETGVYVCAGCKTPVYTSTTKFDSGC 197287 Query: 126 GWPSFSEA 133 GWP+F +A Sbjct: 197288 GWPAFYDA 197311 Score = 30.4 bits (67), Expect(2) = 4e-16, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 26/63 (41%) Frame = +3 Query: 158 RTEVVCKQCE-----------------------AHLGHVFPDGPG---PNGQRFCINSVA 191 RTE++C +C+ +H+GHVF G G P +R C+NSV+ Sbjct: 197430 RTEIMCAKCDG*VEIDGAFGHSFK*RVVLTF*CSHMGHVF-KGEGFKTPTDERHCVNSVS 197606 Query: 192 LKF 194 L F Sbjct: 197607 LVF 197615 >supercont1.7 of Phytophthora infestans Length = 4595942 Score = 29.6 bits (65), Expect = 8.3, Method: Composition-based stats. Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Frame = +3 Query: 147 LRRLDTSLGSARTEVV-CKQCEAHLGHVFPDGPGPNG 182 L RL G AR+EV C + + LGH+ P G P+G Sbjct: 4177218 LHRLVMGFGPARSEVG*CVETQLGLGHLEPSGAPPSG 4177328 >supercont1.220 of Phytophthora infestans Length = 173550 Score = 29.6 bits (65), Expect = 9.1, Method: Composition-based stats. Identities = 19/44 (43%), Positives = 24/44 (54%) Frame = +1 Query: 134 HGTSGSDESHTGILRRLDTSLGSARTEVVCKQCEAHLGHVFPDG 177 H S + + G+ + S GSA VVC+QCE LG FPDG Sbjct: 160753 HDVS*RRDLYRGLGLCVSASTGSA-DGVVCRQCERDLGGEFPDG 160881 TBLASTN 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= SPP00000023_1.0 # Prot # Methionine-R-sufoxide reductase 3 (SelR3) # Hs (192 letters) Database: genome.fa 4921 sequences; 228,543,505 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value supercont1.2 of Phytophthora infestans 85 2e-16 supercont1.23 of Phytophthora infestans 33 0.52 supercont1.45 of Phytophthora infestans 32 1.4 supercont1.60 of Phytophthora infestans 30 5.7 supercont1.1 of Phytophthora infestans 30 8.0 >supercont1.2 of Phytophthora infestans Length = 5928454 Score = 84.7 bits (208), Expect = 2e-16, Method: Composition-based stats. Identities = 37/71 (52%), Positives = 50/71 (70%) Frame = +2 Query: 43 VVFSQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDS 102 V S +E ++RLTP+Q+ V + KGTE A GEY +K+ G+Y C C TP++ S TKFDS Sbjct: 197102 VKLSNEEWKQRLTPMQFQVLRLKGTERAGTGEYNKNKETGVYVCAGCKTPVYTSTTKFDS 197281 Query: 103 GSGWPSFHDVI 113 G GWP+F+D I Sbjct: 197282 GCGWPAFYDAI 197314 >supercont1.23 of Phytophthora infestans Length = 2389742 Score = 33.5 bits (75), Expect = 0.52, Method: Composition-based stats. Identities = 12/18 (66%), Positives = 15/18 (83%) Frame = -2 Query: 137 QCGAHLGHIFDDGPRPTG 154 QCGAH+G +FDD P P+G Sbjct: 2344057 QCGAHIGCLFDDTPCPSG 2344004 >supercont1.45 of Phytophthora infestans Length = 1286539 Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 31/55 (56%) Frame = +3 Query: 80 DPGIYKCVVCGTPLFKSETKFDSGSGWPSFHDVINSEAITFTDDFSYGMHRVETS 134 +PG+Y+C +CG P +++ +G+ + +NS+ T ++++ HR TS Sbjct: 1045074 EPGLYRCNICGQPRKQAQR-----TGYTNLISHLNSKHPTHGEEYAEFQHRNLTS 1045223 >supercont1.60 of Phytophthora infestans Length = 813645 Score = 30.0 bits (66), Expect = 5.7, Method: Composition-based stats. Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = -1 Query: 141 HLGHIFDDGPRPTGKRYC 158 HLG I D G RP+G+ YC Sbjct: 89403 HLGEITDSGARPSGRPYC 89350 >supercont1.1 of Phytophthora infestans Length = 6928287 Score = 29.6 bits (65), Expect = 8.0, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 2/61 (3%) Frame = -1 Query: 113 INSEAITFTDDF-SYGMHRVETSCSQCGAHLGHIFDDGPR-PTGKRYCINSAALSFTPAD 170 ++ +F+DD Y H C + H F PR P+ + C N SF PAD Sbjct: 3667068 VSRTCTSFSDDLLRYIRHIDAVGCDERDGHFALHFLGNPREPSARNTCSNRRDASFVPAD 3666889 Query: 171 S 171 + Sbjct: 3666888 A 3666886 Database: genome.fa Posted date: Feb 28, 2008 11:00 AM Number of letters in database: 228,543,505 Number of sequences in database: 4921 Lambda K H 0.320 0.134 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4921 Number of Hits to DB: 148,449,845 Number of extensions: 2591600 Number of successful extensions: 13057 Number of sequences better than 10.0: 28 Number of HSP's gapped: 13056 Number of HSP's successfully gapped: 38 Length of database: 76,181,168 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 48 (23.1 bits)