TBLASTN 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= SPP00000019_1.0 # Protein # Selenoprotein O (SelO) # Hs (669 letters) Database: genome.fa 4921 sequences; 228,543,505 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value supercont1.3 of Phytophthora infestans 454 e-127 supercont1.1149 of Phytophthora infestans 262 4e-69 >supercont1.3 of Phytophthora infestans Length = 5458067 Score = 454 bits (1168), Expect = e-127, Method: Composition-based stats. Identities = 255/574 (44%), Positives = 334/574 (58%), Gaps = 23/574 (4%) Frame = +1 Query: 77 VPGACFTRVQPTPLRQPRLVALSEXXXXXXXXXXXXXXXXXXXXXL-------------- 122 V GACF+RV PTP+ P LV S + Sbjct: 4606513 VSGACFSRVDPTPIASPELVVTSPNSLLLVGIELNESDSKSQDEGVNGEGDDLQPIETLV 4606692 Query: 123 -FFSGNALLPGAEPAAHCYCGHQFGQFAGQLGDGAAMYLGEVCTATGERWELQLKGAGPT 181 +GN LLPGAE AA CYCGHQFG F+GQLGDGAA+YLGEV A ERWELQLKG+G T Sbjct: 4606693 PILAGNTLLPGAETAAQCYCGHQFGFFSGQLGDGAALYLGEV-VAVDERWELQLKGSGLT 4606869 Query: 182 PFSRQADGRKVLRSSIREFLCSEAMFHLGVPTTRAGACVTS-ESTVVRDVFYDGNPKYEQ 240 P+SR ADGRKVLRS++REFLCSE M LGVPTTRAG+ VTS E+ V+RD+FY+G+ K E Sbjct: 4606870 PYSRTADGRKVLRSTLREFLCSENMHALGVPTTRAGSVVTSKETQVLRDIFYNGDAKMEP 4607049 Query: 241 CTVVLRVASTFIRFGSFEIFKSADEHTGRAGPSV---GRNDIRVQLLDYVISSFYPEIQA 297 VV R+A +F+RFGSFEIFK D+ TG AGPS + ++ ++LD+ I +Y EI Sbjct: 4607050 TAVVTRIAKSFLRFGSFEIFKDEDKLTGLAGPSAHLENKEEMMREMLDFTIRQYYSEISG 4607229 Query: 298 AHASDSVQRNAAFFREVTRRTARMVAEWQCVGFCHGVLNTDNMSILGLTIDYGPFGFLDR 357 A ++ FF+EV RRTA +VA+WQ +GFCHGVLNTDNMSI+G T+DYGPFGF++ Sbjct: 4607230 A------RKYEKFFQEVVRRTAMLVAKWQSIGFCHGVLNTDNMSIVGDTLDYGPFGFMEH 4607391 Query: 358 YDPDHVCNASDNTGRYAYSKQPEVCRWNLRKXXXXXXXXXXXXXXXXILAEEFDAEFQRH 417 +DP H+CN SD+ GRY Y QPEVC+WN IL E FDA ++ Sbjct: 4607392 FDPKHICNTSDDRGRYRYEAQPEVCKWNCGVLADQLGLVTERAGLEPIL-ESFDAVYEAE 4607568 Query: 418 YLQKMRRKLGLVQVELEEDGALVSKLLETMHLTGADFTNTFYLLSSFPVELESPGLAEFL 477 Y++ MR KLGL E +ED LV L + + TGADFT TF LS V + L Sbjct: 4607569 YMRLMREKLGLSDEE-KEDKMLVDTLFDVLAFTGADFTCTFRYLSELDVFETGDCREQVL 4607745 Query: 478 ARLMEQCASLEELRLAFRPQ---MDPRQLSMMLMLAQSNPQLFALMG-TRAGIARELERV 533 +L+ +L + + + Q M++ML Q NP G T A +A+ Sbjct: 4607746 NKLVAVSETLAQQKRKLELDSGGVSDAQFDMVVMLLQENPVRARQYGITPALVAQIKANR 4607925 Query: 534 EQQSRLEQLSAAELQSRNQGHWADWLQAYRARLDKDLEGAGDAAAWQAEHVRVMHANNPK 593 E + L+ + E + W DW+ Y +R+ + GDAA+ A+ R M NP Sbjct: 4607926 EAKKLLDATTDEERMDSIRTVWVDWIDVYISRVKEQ----GDAAS-DADRRRRMLDVNPL 4608090 Query: 594 YVLRNYIAQNAIEAAERGDFSEVRRVLKLLETPY 627 +VLRN++AQ AI+ A GD+ V+ + +L+ P+ Sbjct: 4608091 FVLRNHVAQKAIDFAHEGDYDAVQHIFELVTNPF 4608192 Score = 454 bits (1168), Expect = e-127, Method: Composition-based stats. Identities = 255/574 (44%), Positives = 334/574 (58%), Gaps = 23/574 (4%) Frame = +1 Query: 77 VPGACFTRVQPTPLRQPRLVALSEXXXXXXXXXXXXXXXXXXXXXL-------------- 122 V GACF+RV PTP+ P LV S + Sbjct: 4612756 VSGACFSRVDPTPIASPELVVTSPNSLLLVGIELNESDSKSQDEGVNGEGDDLQPIETLV 4612935 Query: 123 -FFSGNALLPGAEPAAHCYCGHQFGQFAGQLGDGAAMYLGEVCTATGERWELQLKGAGPT 181 +GN LLPGAE AA CYCGHQFG F+GQLGDGAA+YLGEV A ERWELQLKG+G T Sbjct: 4612936 PILAGNTLLPGAETAAQCYCGHQFGFFSGQLGDGAALYLGEV-VAVDERWELQLKGSGLT 4613112 Query: 182 PFSRQADGRKVLRSSIREFLCSEAMFHLGVPTTRAGACVTS-ESTVVRDVFYDGNPKYEQ 240 P+SR ADGRKVLRS++REFLCSE M LGVPTTRAG+ VTS E+ V+RD+FY+G+ K E Sbjct: 4613113 PYSRTADGRKVLRSTLREFLCSENMHALGVPTTRAGSVVTSKETQVLRDIFYNGDAKMEP 4613292 Query: 241 CTVVLRVASTFIRFGSFEIFKSADEHTGRAGPSV---GRNDIRVQLLDYVISSFYPEIQA 297 VV R+A +F+RFGSFEIFK D+ TG AGPS + ++ ++LD+ I +Y EI Sbjct: 4613293 TAVVTRIAKSFLRFGSFEIFKDEDKLTGLAGPSAHLENKEEMMREMLDFTIRQYYSEISG 4613472 Query: 298 AHASDSVQRNAAFFREVTRRTARMVAEWQCVGFCHGVLNTDNMSILGLTIDYGPFGFLDR 357 A ++ FF+EV RRTA +VA+WQ +GFCHGVLNTDNMSI+G T+DYGPFGF++ Sbjct: 4613473 A------RKYEKFFQEVVRRTAMLVAKWQSIGFCHGVLNTDNMSIVGDTLDYGPFGFMEH 4613634 Query: 358 YDPDHVCNASDNTGRYAYSKQPEVCRWNLRKXXXXXXXXXXXXXXXXILAEEFDAEFQRH 417 +DP H+CN SD+ GRY Y QPEVC+WN IL E FDA ++ Sbjct: 4613635 FDPKHICNTSDDRGRYRYEAQPEVCKWNCGVLADQLGLVTERAGLEPIL-ESFDAVYEAE 4613811 Query: 418 YLQKMRRKLGLVQVELEEDGALVSKLLETMHLTGADFTNTFYLLSSFPVELESPGLAEFL 477 Y++ MR KLGL E +ED LV L + + TGADFT TF LS V + L Sbjct: 4613812 YMRLMREKLGLSDEE-KEDKMLVDTLFDVLAFTGADFTCTFRYLSELDVFETGDCREQVL 4613988 Query: 478 ARLMEQCASLEELRLAFRPQ---MDPRQLSMMLMLAQSNPQLFALMG-TRAGIARELERV 533 +L+ +L + + + Q M++ML Q NP G T A +A+ Sbjct: 4613989 NKLVAVSETLAQQKRKLELDSGGVSDAQFDMVVMLLQENPVRARQYGITPALVAQIKANR 4614168 Query: 534 EQQSRLEQLSAAELQSRNQGHWADWLQAYRARLDKDLEGAGDAAAWQAEHVRVMHANNPK 593 E + L+ + E + W DW+ Y +R+ + GDAA+ A+ R M NP Sbjct: 4614169 EAKKLLDATTDEERMDSIRTVWVDWIDVYISRVKEQ----GDAAS-DADRRRRMLDVNPL 4614333 Query: 594 YVLRNYIAQNAIEAAERGDFSEVRRVLKLLETPY 627 +VLRN++AQ AI+ A GD+ V+ + +L+ P+ Sbjct: 4614334 FVLRNHVAQKAIDFAHEGDYDAVQHIFELVTNPF 4614435 >supercont1.1149 of Phytophthora infestans Length = 6440 Score = 262 bits (670), Expect = 4e-69, Method: Composition-based stats. Identities = 140/272 (51%), Positives = 173/272 (63%), Gaps = 19/272 (6%) Frame = +1 Query: 77 VPGACFTRVQPTPLRQPRLVALSEXXXXXXXXXXXXXXXXXXXXXL-------------- 122 V GACF+RV PTP+ P LV S + Sbjct: 2209 VSGACFSRVDPTPIASPELVVTSPNSLLLVGIELNESDSKSQDEGVNGEGDDLQPIETLV 2388 Query: 123 -FFSGNALLPGAEPAAHCYCGHQFGQFAGQLGDGAAMYLGEVCTATGERWELQLKGAGPT 181 +GN LLPGAE AA CYCGHQFG F+GQLGDGAA+YLGEV A ERWELQLKG+G T Sbjct: 2389 PILAGNTLLPGAETAAQCYCGHQFGFFSGQLGDGAALYLGEV-VAVDERWELQLKGSGLT 2565 Query: 182 PFSRQADGRKVLRSSIREFLCSEAMFHLGVPTTRAGACVTS-ESTVVRDVFYDGNPKYEQ 240 P+SR ADGRKVLRS++REFLCSE M LGVPTTRAG+ VTS E+ V+RD+FY+G+ K E Sbjct: 2566 PYSRTADGRKVLRSTLREFLCSENMHALGVPTTRAGSVVTSKETQVLRDIFYNGDAKMEP 2745 Query: 241 CTVVLRVASTFIRFGSFEIFKSADEHTGRAGPSV---GRNDIRVQLLDYVISSFYPEIQA 297 VV R+A +F+RFGSFEIFK D+ TG AGPS + ++ ++LD+ I +Y EI Sbjct: 2746 TAVVTRIAKSFLRFGSFEIFKDEDKLTGLAGPSAHLENKEEMMREMLDFTIRQYYSEISG 2925 Query: 298 AHASDSVQRNAAFFREVTRRTARMVAEWQCVG 329 A ++ FF+EV RRTA +VA+WQ +G Sbjct: 2926 A------RKYEKFFQEVVRRTAMLVAKWQSIG 3003