TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000016_1.0 # Protein # Selenoprotein K (SelK) # Hs
         (94 letters)

Database: genome.fa 
           4921 sequences; 228,543,505 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercont1.5 of Phytophthora infestans                                 45   5e-05

>supercont1.5 of Phytophthora infestans
          Length = 4768765

 Score = 45.4 bits (106), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/38 (50%), Positives = 24/38 (63%)
 Frame = +1

Query: 1       MVYISNGQVLDSRSQSPWRLSLITDFFWGIAEFVVLFF 38
               M Y+  G V+  RS  PWRLS++TD FWG   FV L +
Sbjct: 3617149 MTYVCGGDVVAKRS--PWRLSIVTDMFWGAINFVGLLY 3617256