TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000015_1.0 # Protein # Selenoprotein I (SelI) # Hs
         (397 letters)

Database: genome.fa 
           4921 sequences; 228,543,505 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercont1.3 of Phytophthora infestans                                100   3e-28
supercont1.24 of Phytophthora infestans                                70   9e-17
supercont1.65 of Phytophthora infestans                                52   1e-13

>supercont1.3 of Phytophthora infestans
          Length = 5458067

 Score =  100 bits (249), Expect(2) = 3e-28,   Method: Composition-based stats.
 Identities = 58/145 (40%), Positives = 78/145 (53%)
 Frame = +2

Query: 5       EYVSPEQLAGFDKYKYSAVDTNPLSLYVMHPFWNTIVKVFPTWLAPNLITFSGFLLVVFN 64
               +YVS E       Y+Y   D + +  +V+ P  N +VK+ P WLAPNLIT  G +LV  +
Sbjct: 4323437 KYVSQEGSEKLRTYEYHGADNSLVYKHVLTPMNNFLVKLLPLWLAPNLITLIGLILVGGS 4323616

Query: 65      FLLMAYFDPDFYASAPGHKHVPDWVWIVVGILNFVAYTLDGVDGKQARRTNSSTPLGELF 124
                 L  +  P     AP       W  +V  +  F   TLD +DGKQARRT SS+PLG LF
Sbjct: 4323617 HTLFVFLCPFLVGDAPW------WAMVVAALALFTYQTLDNLDGKQARRTKSSSPLGLLF 4323778

Query: 125     DHGLDSWSCVYFVVTVYSIFGRGST 149
               DHG D+ +     +T+ SI   G+T
Sbjct: 4323779 DHGCDALNVSVGTMTMASILQMGTT 4323853



 Score = 46.2 bits (108), Expect(2) = 3e-28,   Method: Composition-based stats.
 Identities = 46/153 (30%), Positives = 71/153 (46%), Gaps = 23/153 (15%)
 Frame = +3

Query: 168     ILSHWEKYNTGILFLPWGYDISQVTISFVYI--VTAVVGVEAWYEPFLFNFLYRDLFT-- 223
               I++ W +Y +G L LP     ++  +  + +  VTAVVGV  W +  +       LF   
Sbjct: 4323966 IIAGWCRYYSGSLELPLINGPTEGILIGIALKLVTAVVGVGFWNQEMIEGVQNNSLFVIV 4324145

Query: 224     AMIIGC---------ALCVTLP------MSLLNFFRSYKN--NTLKLN--SVYEAMVPLF 264
                MI  C          L   +P      +S+  F  S +N  + ++LN  SV  A   L 
Sbjct: 4324146 TMISSCFTLLVKYVGGLIFCIPAVRFANLSMFCFITSVRNALHAVRLNQDSVLVAFTRLL 4324325

Query: 265     SPCLLFILSTAWILWSPSDILELHPRVFYFMVG 297
                  ++  L+  W L+SPSDI   HPR+F +M+G
Sbjct: 4324326 PFVVINTLAGLWALYSPSDIFSTHPRMFLWMLG 4324424


>supercont1.24 of Phytophthora infestans
          Length = 2281020

 Score = 69.7 bits (169), Expect(2) = 9e-17,   Method: Composition-based stats.
 Identities = 61/233 (26%), Positives = 107/233 (45%), Gaps = 18/233 (7%)
 Frame = -2

Query: 86     PDWVWIVVGILN----FVAYTLDGVDGKQARRTNSSTPLGELFDHGLDSWSCVYFVVTVY 141
              P +V++ V IL+    F   T+D +DGKQARRT +S+PLG+LFDHG D+      V TV+
Sbjct: 706619 PLFVFVQVYILSALGLFFYQTMDALDGKQARRTGASSPLGQLFDHGCDA------VCTVF 706458

Query: 142    SIFGRGST--GXXXXXXXXXXXXXXXXXILSHWEKYNTGILFLP---WGYDISQVTISFV 196
              ++    +T                     L+ WE+Y+TG++      +G    Q+T+  V
Sbjct: 706457 NVLSASATCQAGVGLRPYIALSSVSIAFYLAQWEEYHTGVMSCGNGFFGVTEGQLTLVAV 706278

Query: 197    YIVTAVVGVEAWYEPFLFNFLYRDLFTAMIIGCALCVTLPMS---LLNFFRSYKNNTL-- 251
              ++V A  G   W         +    T ++IG  +   + ++   + N  R+  +     
Sbjct: 706277 HLVAAFFGAGFWTAEIPIPTPFPVTMTDVLIGALVASNVLLAYGNISNVLRAAPDAIPRD 706098

Query: 252    ----KLNSVYEAMVPLFSPCLLFILSTAWILWSPSDILELHPRVFYFMVGTAF 300
                  K  S + A++ L    +L +L + WI    ++    +P +F F +G  +
Sbjct: 706097 ELGNKHISKHLALIQLIPIGILLVLGSLWICGPDAENYANYPVLFLFPIGIGY 705939



 Score = 38.5 bits (88), Expect(2) = 9e-17,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = -1

Query: 32     VMHPFWNTIVKVFPTWLAPNLITFSGFLLVVFNFLLMAYFDPDFYASAPG 81
              V++ FW    +  P W+APNL+T  G  +++F  ++  Y+ P F    P 
Sbjct: 706833 VLNHFWTYSAQFLPIWMAPNLVTMIGTGVMMFTTVVQLYYAPHFSEICPA 706684


>supercont1.65 of Phytophthora infestans
          Length = 722757

 Score = 52.0 bits (123), Expect(3) = 1e-13,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 35/67 (52%)
 Frame = +2

Query: 83     KHVPDWVWIVVGILNFVAYTLDGVDGKQARRTNSSTPLGELFDHGLDSWSCVYFVVTVYS 142
              +  P WV+   G        LD  DGKQAR+T +S+PLG LFDHG D+ + V    T  S
Sbjct: 493793 EEAPRWVYANAGFSLLFYQVLDVADGKQARKTGNSSPLGLLFDHGCDALNVVVSACTFAS 493972

Query: 143    IFGRGST 149
                  G T
Sbjct: 493973 TLVLGPT 493993



 Score = 32.3 bits (72), Expect(3) = 1e-13,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +1

Query: 4      YEYVSPEQLAGFDKYKYSAVDTNPLSLYVMHPFWNTIVK-VFPTWLAPNLITFSGFLLVV 62
              Y YV+ + +     Y YS  D + L   V+ P    +V  V    LAPN IT     LV+
Sbjct: 493510 YRYVTEDGVKRILTYHYSGSDASLLYSNVISPLAQWLVDHVLSPRLAPNAITIGALSLVI 493689

Query: 63     FNFLLMAY 70
               + ++M +
Sbjct: 493690 LSHVIMLW 493713



 Score = 32.3 bits (72), Expect(3) = 1e-13,   Method: Composition-based stats.
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +1

Query: 169    LSHWEKYNTGILFLPW--GYDISQVTISFVYIVTAVVGVEAWYEP 211
              ++ WE+Y TG L LP   G +   + I  VYI TA+VG   W +P
Sbjct: 494110 MATWEEYYTGTLALPTVNGPNEGLLFIYSVYIGTAIVGPNVWTQP 494244



 Score = 38.9 bits (89), Expect = 0.047,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 22/33 (66%)
 Frame = +2

Query: 269    LFILSTAWILWSPSDILELHPRVFYFMVGTAFA 301
              L +LS  W+LWSPSD+   HPR+  + VG  FA
Sbjct: 494474 LVLLSGLWVLWSPSDVFTDHPRLLIWTVGLLFA 494572