TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000013_1.0 # Protein # Selenoprotein 15 (Sel15) # Hs
         (124 letters)

Database: genome.fa 
           4921 sequences; 228,543,505 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercont1.75 of Phytophthora infestans                                31   0.85 
supercont1.3 of Phytophthora infestans                                 31   0.85 
supercont1.169 of Phytophthora infestans                               23   5.8  

>supercont1.75 of Phytophthora infestans
          Length = 515009

 Score = 31.2 bits (69), Expect = 0.85,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 102   PQVQVCPWFRPCIKAFGRQWEH 123
             P  Q+ PWFRPCI+  G +  H
Sbjct: 29915 PNRQLSPWFRPCIRPVGLRPSH 29980


>supercont1.3 of Phytophthora infestans
          Length = 5458067

 Score = 31.2 bits (69), Expect = 0.85,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 102    PQVQVCPWFRPCIKAFGRQWEH 123
              P  Q+ PWFRPCI+  G +  H
Sbjct: 835418 PNRQLSPWFRPCIRPVGLRPSH 835353


>supercont1.169 of Phytophthora infestans
          Length = 178907

 Score = 23.5 bits (49), Expect(2) = 5.8,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 101    FPQVQVCPWFRPCIKAFGRQWEH 123
              F  V+V PW R C+    R ++H
Sbjct: 171073 FSPVRVLPWLRTCVLFRSRAFQH 171005



 Score = 22.7 bits (47), Expect(2) = 5.8,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 91     LEVCGUKLGRFPQVQVCPW 109
              L  CG + GR   + V PW
Sbjct: 171156 LAYCGLRFGRLTVLHVYPW 171100


  Database: genome.fa
    Posted date:  Feb 28, 2008 11:00 AM
  Number of letters in database: 228,543,505
  Number of sequences in database:  4921
  
Lambda     K      H
   0.330    0.142    0.482 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4921
Number of Hits to DB: 40,564,436
Number of extensions: 505376
Number of successful extensions: 2655
Number of sequences better than 10.0: 16
Number of HSP's gapped: 2655
Number of HSP's successfully gapped: 27
Length of query: 124
Length of database: 76,181,168
Length adjustment: 99
Effective length of query: 25
Effective length of database: 75,693,989
Effective search space: 1892349725
Effective search space used: 1892349725
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 47 (22.7 bits)