TBLASTN 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= SPP00000032_1.0 # Prot # Selenophosphate synthetase 1 (SPS1) # Hs (392 letters) Database: genome.fa 4921 sequences; 228,543,505 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value supercont1.1 of Phytophthora infestans 166 4e-90 supercont1.194 of Phytophthora infestans 33 2.4 supercont1.17 of Phytophthora infestans 33 2.4 supercont1.46 of Phytophthora infestans 32 7.4 >supercont1.1 of Phytophthora infestans Length = 6928287 Score = 166 bits (419), Expect(3) = 4e-90, Method: Composition-based stats. Identities = 87/175 (49%), Positives = 117/175 (66%), Gaps = 1/175 (0%) Frame = +3 Query: 6 SFNPESYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESLQENHFQEDEQFLGAVMPRLG 65 +F+P + L+ F LT ++ LKG GCK+PQ KLL L + F + P Sbjct: 6678339 AFDPVALGLEPDFVLTNYSALKGCGCKLPQ---AKLLGYLDD--------FANDLKPNET 6678485 Query: 66 IGMDTCVIPLRHG-GLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDNMLM 124 GMD+ V+ + HG L LV TTD+ +P V+DPY+ G+IACANVLSD YAMGVTE D MLM Sbjct: 6678486 PGMDSSVVKISHGTDLYLVSTTDFFFPSVEDPYVQGKIACANVLSDAYAMGVTEVDTMLM 6678665 Query: 125 LLGVSNKMTDRERDKVMPLIIQGFKDAAEEAGTSVTGGQTVLNPWIVLGGVATTV 179 +LGV M++++RD V +I+GF D A +A T+VTGGQTV+NPW ++GGVA +V Sbjct: 6678666 ILGVCRDMSEKQRDVVTTQMIRGFNDLARQACTNVTGGQTVMNPWPIVGGVAMSV 6678830 Score = 124 bits (312), Expect(3) = 4e-90, Method: Composition-based stats. Identities = 61/121 (50%), Positives = 81/121 (66%) Frame = +1 Query: 258 FNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKMAAVSKACGNMFGLMHGTC 317 + AH+ATD+TGFGI+ HA+N AK Q +VSF IH LP++ MA V++A GN F L+ G Sbjct: 6679210 YGAHSATDVTGFGIVAHARNQAKSQLGDVSFEIHTLPIIKNMAKVNEAIGNSFKLLDGFA 6679389 Query: 318 PETSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEVAP 377 ETSGGLL+CLP E A F EI+ +G AW++G V G++ A I+ P IIEV+P Sbjct: 6679390 AETSGGLLLCLPAESADAFIKEIREL---DGKPAWVVGRVVAGSKDATIVPDPMIIEVSP 6679560 Query: 378 Q 378 Sbjct: 6679561 H 6679563 Score = 84.3 bits (207), Expect(3) = 4e-90, Method: Composition-based stats. Identities = 37/74 (50%), Positives = 55/74 (74%) Frame = +2 Query: 183 NEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQWLDIPEKWNKIKLVVTQEDVELAYQEAMM 242 ++ I P+NA GDV++LTKPLGTQVAV + QW P++W +++ VVT +D ++A+Q A Sbjct: 6678911 SQIIRPENAAVGDVIILTKPLGTQVAVNLFQWKKRPDRWQRVENVVTHKDADVAFQMASE 6679090 Query: 243 NMARLNRTAAGLMH 256 +M+RLN AA +MH Sbjct: 6679091 SMSRLNLNAAKMMH 6679132 >supercont1.194 of Phytophthora infestans Length = 143641 Score = 33.1 bits (74), Expect = 2.4, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 1/63 (1%) Frame = +3 Query: 224 IKLVVTQEDVELAYQEAMMNMARLNRTAAGLMHTFN-AHAATDITGFGILGHAQNLAKQQ 282 + L T+ ++ +A ++ + ++R A GL++ + AH D+ G +GHA + +Q Sbjct: 28521 LTLPFTRSSARISRPDAFLSFSSVSRLATGLVNVWTLAHIFADVDIDGAVGHALGGSNRQ 28700 Query: 283 RNE 285 RN+ Sbjct: 28701 RND 28709 >supercont1.17 of Phytophthora infestans Length = 2694556 Score = 33.1 bits (74), Expect = 2.4, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 1/63 (1%) Frame = +1 Query: 224 IKLVVTQEDVELAYQEAMMNMARLNRTAAGLMHTFN-AHAATDITGFGILGHAQNLAKQQ 282 + L T+ ++ +A ++ + ++R A GL++ + AH D+ G +GHA + +Q Sbjct: 1699342 LTLPFTRSSARISRPDAFLSFSSVSRLATGLVNVWTLAHIFADVDIDGAVGHALGGSNRQ 1699521 Query: 283 RNE 285 RN+ Sbjct: 1699522 RND 1699530 >supercont1.46 of Phytophthora infestans Length = 1163948 Score = 31.6 bits (70), Expect = 7.4, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 1/69 (1%) Frame = -3 Query: 168 PWIVLGGVATTVCQPNEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQWLDI-PEKWNKIKL 226 P+ LG +T P+ F+ VPG + P T + A W+ + P W ++ Sbjct: 216945 PYHKLGAASTKTSSPSRFLERIPIVPGGCSRVVSPQPTSIVWAPLSWMRMDPIPWKYLR- 216769 Query: 227 VVTQEDVEL 235 V QED+ L Sbjct: 216768 -VLQEDLRL 216745 TBLASTN 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= SPP00000033_1.0 # Prot # Selenophosphate synthetase 2 (SPS2) # Hs (448 letters) Database: genome.fa 4921 sequences; 228,543,505 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value supercont1.1 of Phytophthora infestans 129 3e-77 >supercont1.1 of Phytophthora infestans Length = 6928287 Score = 129 bits (325), Expect(3) = 3e-77, Method: Composition-based stats. Identities = 78/199 (39%), Positives = 97/199 (48%), Gaps = 1/199 (0%) Frame = +3 Query: 33 SNYRPFEPQALGLSPSWRLTGFSGMKGUGCKVPQEALLKLLAGLTRPDVRPPLGRGLVGG 92 +N F+P ALGL P + LT +S +KG GCK+PQ LL L D++P Sbjct: 6678327 ANAAAFDPVALGLEPDFVLTNYSALKGCGCKLPQAKLLGYLDDFAN-DLKP--------- 6678476 Query: 93 QEEASQEAGLPAGAGPSPTFPALGIGMDSCVIPLRHG-GLSLVQTTDFFYPLVEDPYMMG 151 +P GMDS V+ + HG L LV TTDFF+P VEDPY+ G Sbjct: 6678477 --------------NETP-------GMDSSVVKISHGTDLYLVSTTDFFFPSVEDPYVQG 6678593 Query: 152 RIACANVLSDLYAMGITECDNXXXXXXXXXXXXXXXREKVTPLMVKGFRDXXXXXXXXXX 211 +IACANVLSD YAMG+TE D R+ VT M++GF D Sbjct: 6678594 KIACANVLSDAYAMGVTEVDTMLMILGVCRDMSEKQRDVVTTQMIRGFNDLARQACTNVT 6678773 Query: 212 XXXXXXNPWIIIGGVATVV 230 NPW I+GGVA V Sbjct: 6678774 GGQTVMNPWPIVGGVAMSV 6678830 Score = 118 bits (295), Expect(3) = 3e-77, Method: Composition-based stats. Identities = 63/120 (52%), Positives = 81/120 (67%), Gaps = 1/120 (0%) Frame = +1 Query: 309 FNAHAATDITGFGILGHSQNLAKQQRNEVSFVIHNLPIIAKMAAVSKASGR-FGLLQGTS 367 + AH+ATD+TGFGI+ H++N AK Q +VSF IH LPII MA V++A G F LL G + Sbjct: 6679210 YGAHSATDVTGFGIVAHARNQAKSQLGDVSFEIHTLPIIKNMAKVNEAIGNSFKLLDGFA 6679389 Query: 368 AETSGGLLICLPREQAARFCSEIKSSKYGEGHQAWIVGIVEKGNRTARIIDKPRVIEVLP 427 AETSGGLL+CLP E A F EI+ +G AW+VG V G++ A I+ P +IEV P Sbjct: 6679390 AETSGGLLLCLPAESADAFIKEIREL---DGKPAWVVGRVVAGSKDATIVPDPMIIEVSP 6679560 Score = 84.7 bits (208), Expect(3) = 3e-77, Method: Composition-based stats. Identities = 37/74 (50%), Positives = 55/74 (74%) Frame = +2 Query: 234 NEFIMPDSAVVGDVLVLTKPLGTQVAVNAHQWLDNPERWNKVKMVVSREEVELAYQEAMF 293 ++ I P++A VGDV++LTKPLGTQVAVN QW P+RW +V+ VV+ ++ ++A+Q A Sbjct: 6678911 SQIIRPENAAVGDVIILTKPLGTQVAVNLFQWKKRPDRWQRVENVVTHKDADVAFQMASE 6679090 Query: 294 NMATLNRTAAGLMH 307 +M+ LN AA +MH Sbjct: 6679091 SMSRLNLNAAKMMH 6679132 Database: genome.fa Posted date: Feb 28, 2008 11:00 AM Number of letters in database: 228,543,505 Number of sequences in database: 4921 Lambda K H 0.320 0.135 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4921 Number of Hits to DB: 206,936,941 Number of extensions: 3129535 Number of successful extensions: 15273 Number of sequences better than 10.0: 4 Number of HSP's gapped: 15265 Number of HSP's successfully gapped: 11 Length of database: 76,181,168 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 52 (24.6 bits)