TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000037_1.0 # Prot # SECIS binding protein 2 (SBP2) # Hs
         (854 letters)

Database: genome.fa 
           4921 sequences; 228,543,505 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercont1.10 of Phytophthora infestans                                46   7e-04

>supercont1.10 of Phytophthora infestans
          Length = 3761764

 Score = 46.2 bits (108), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 24/132 (18%)
 Frame = -1

Query: 657     DRMYQKDPVKAKTKRRLVLGLREVXXXXXXXXXXCVIISPN---CEKIQSKGGLDDTLHT 713
               +R Y ++    K  RRLVLG+ EV           +II+ +   CE ++ K         
Sbjct: 1276657 ERAYAQNKA-VKRSRRLVLGMHEVRRGLLCNKIVLLIIATDLDGCEAVEEK------YRE 1276499

Query: 714     IIDYACEQNIP---------FVFA------------LNRKALGRSLNKAVPVSVVGIFSY 752
               ++  A E  +P         F++             L R+ LG+ L+K+V VS VG++S 
Sbjct: 1276498 LVAIAKEHKVPIHAPVNRCGFLYEDALYGWPNAKSFLARRKLGKMLHKSVRVSCVGVYSI 1276319

Query: 753     DGAQDQFHKMVE 764
               +GA D F ++++
Sbjct: 1276318 EGANDLFQQILQ 1276283


  Database: genome.fa
    Posted date:  Feb 28, 2008 11:00 AM
  Number of letters in database: 228,543,505
  Number of sequences in database:  4921
  
Lambda     K      H
   0.311    0.128    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4921
Number of Hits to DB: 196,823,210
Number of extensions: 2759287
Number of successful extensions: 14296
Number of sequences better than 10.0: 7
Number of HSP's gapped: 14292
Number of HSP's successfully gapped: 7
Length of query: 854
Length of database: 76,181,168
Length adjustment: 123
Effective length of query: 731
Effective length of database: 75,575,885
Effective search space: 55245971935
Effective search space used: 55245971935
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.4 bits)