TBLASTN 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= SPP00000034_1.0 # Protein # Thioredoxin reductase 1 (TR1) # Homo sapiens (499 letters) Database: genome.fa 2809 sequences; 26,957,458 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Plasmodium_vivax_SaI-1|ctg_7052|2005-09-01|ds-DNA|Plasmodium_viv... 427 e-120 Plasmodium_vivax_SaI-1|ctg_6877|2005-09-01|ds-DNA|Plasmodium_viv... 189 3e-48 Plasmodium_vivax_SaI-1|ctg_6950|2005-09-01|ds-DNA|Plasmodium_viv... 96 6e-20 Plasmodium_vivax_SaI-1|ctg_7061|2005-09-01|ds-DNA|Plasmodium_viv... 95 9e-20 >Plasmodium_vivax_SaI-1|ctg_7052|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR Length = 1198945 Score = 427 bits (1097), Expect = e-120, Method: Composition-based stats. Identities = 224/499 (44%), Positives = 307/499 (61%), Gaps = 18/499 (3%) Frame = -2 Query: 11 YDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLM 70 YDYD ++IGGG GG+A+AKEAA +G KV++ D+V P+ GT+WG+GGTCVNVGC+PKKLM Sbjct: 904347 YDYDYVVIGGGPGGMASAKEAAAHGAKVLLFDYVKPSSKGTKWGIGGTCVNVGCVPKKLM 904168 Query: 71 HQAALLGQALQ-DSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYEN 129 H A +G + DS YGW ++ + H+W +++ VQ+HI SLN+ Y LR +V Y N Sbjct: 904167 HYAGNMGSLFKLDSTQYGWTCKD-LSHNWGKLVSTVQSHIRSLNFSYLTGLRSSQVKYIN 903991 Query: 130 AYGQFIGPHRIK--ATNNKGKEKIYSAERFLIATGERPRYL-GIPGDKEYCISSDDLFSL 186 H + + +E+ +A+ LIATG RP + G +E I+SDD+FS+ Sbjct: 903990 GLASLKDEHTVAYYLKGDMSQEETITAKYILIATGCRPHIPEDVEGARELSITSDDIFSM 903811 Query: 187 PYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIK 246 PGKTL+VGASYVALECAGFL +G DVTV VRSI+LRGFD A K+ +MEE G+ Sbjct: 903810 KKVPGKTLIVGASYVALECAGFLNSLGFDVTVAVRSIVLRGFDSQCALKVKNYMEEQGVL 903631 Query: 247 FIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVG 306 F +P K+ + G ++ V+ +E Y+TV+ A GR + LE + Sbjct: 903630 FKEGVLPKKLSK---GEEDKVAVLFTDGTTEL-----YDTVLYATGRKGDIAMLHLERLN 903475 Query: 307 VKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCD 366 + +++ KI + TNVP I+A+GD+ D EL PVAI+AG +LA+RL+ S D Sbjct: 903474 IHVDKSANKIITNEGSCTNVPNIFAVGDVAVDVPELAPVAIKAGEILARRLFKQSQEIMD 903295 Query: 367 YENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRD--------- 417 Y +PT ++TP+EYGACG SEEKA E FG N+EV+ F LE + R+ Sbjct: 903294 YTFIPTAIYTPIEYGACGYSEEKAYEAFGTSNVEVFLQEFNNLEISAVHREKHVRAQKDQ 903115 Query: 418 -----NNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIH 472 ++ C +K++C ++ RVVGFH +GPNAGEVTQG A AL+ K DS +GIH Sbjct: 903114 YDTDVSSTCLSKLVCLKSEDNRVVGFHYVGPNAGEVTQGMALALRLKARKSDFDSCVGIH 902935 Query: 473 PVCAEVFTTLSVTKRSGAS 491 P AE F LSVT+ SG S Sbjct: 902934 PTDAESFMNLSVTRASGLS 902878 >Plasmodium_vivax_SaI-1|ctg_6877|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR Length = 2031768 Score = 189 bits (480), Expect = 3e-48, Method: Composition-based stats. Identities = 137/478 (28%), Positives = 231/478 (48%), Gaps = 63/478 (13%) Frame = +2 Query: 68 KLMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVY 127 ++M AA + L++SR+YG+ + + ++E +I LN YR L++ V Y Sbjct: 1210841 QIMFNAASIHDILENSRHYGFDTQ--FSFNLPLLVERRDKYIRRLNDIYRQNLKKDNVEY 1211014 Query: 128 ENAYGQFIGPHRI---KATNNKGK-----------------------EKIYSAERFLIAT 161 G + +++ K + G+ +++ + LIA Sbjct: 1211015 FEGKGSLLSENQVLIKKVSQVDGEADGVADDEAASDGVSAGVSAEENDQVIEGKNILIAV 1211194 Query: 162 GERPRYLGIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR 221 G +P + + G E+ ISSDD F + + ++G+ Y+A+E + +G++ + R Sbjct: 1211195 GNKPIFPDVKG-VEHTISSDDFFKIKEAK-RIGIIGSGYIAVELINVVRRLGIESYIFAR 1211368 Query: 222 -SILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEII 280 + LLR FD+ + N++ M+++ I I VE+IE L + E Sbjct: 1211369 GNRLLRKFDETVINELENDMKKNNINIITH---ANVEEIEKVKEKNLTIYLSDGRKYE-- 1211533 Query: 281 EGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDI----- 335 ++ V+ +GR T+ + LE + +K + I V D ++T+V +IYA+GD Sbjct: 1211534 --HFDYVIYCVGRSPNTKDLNLEALNIKTQKDY--ILVDDNQRTSVKHIYAVGDCCMVKK 1211701 Query: 336 ---LED-------------------------KVELTPVAIQAGRLLAQRLYAGSTVKCDY 367 +ED V+LTPVAI AGRLLA RL+ + K +Y Sbjct: 1211702 NQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFMNKSRKTNY 1211881 Query: 368 ENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRD---NNKCYAK 424 + +P+ +F+ G G SE++A++ +G+EN++VY S F L +++ D K Y K Sbjct: 1211882 KLIPSVIFSHPPIGTIGFSEQEAIDIYGKENVKVYESRFTNLFFSVYDMDPAQKEKTYLK 1212061 Query: 425 IICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVFTTL 482 ++C K+ E + G H++G NA E+ QGFA ALK TK+ D TI IHP AE F T+ Sbjct: 1212062 LVCVGKE-ELIKGLHIVGLNADEIIQGFAVALKMNATKRDFDETIPIHPTAAEEFLTM 1212232 Score = 35.4 bits (80), Expect = 0.094, Method: Composition-based stats. Identities = 13/15 (86%), Positives = 15/15 (100%) Frame = +2 Query: 55 LGGTCVNVGCIPKKL 69 LGGTCVNVGC+PKK+ Sbjct: 1210574 LGGTCVNVGCVPKKV 1210618 >Plasmodium_vivax_SaI-1|ctg_6950|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR Length = 1370936 Score = 95.5 bits (236), Expect = 6e-20, Method: Composition-based stats. Identities = 138/556 (24%), Positives = 225/556 (40%), Gaps = 88/556 (15%) Frame = -1 Query: 12 DYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMH 71 +YD+ I+G G GG AAA A + G KV++ G + +GGTCVNVGCIP K + Sbjct: 697130 EYDVGILGCGVGGHAAAINAMERGLKVIIFT-------GDQDSIGGTCVNVGCIPSKSLL 696972 Query: 72 QAALLGQALQD-SRNYGWKV--------------------EETVKHDWDRMIEAVQNHIG 110 A + L++ ++ Y + + +TV D ++ E Q I Sbjct: 696971 YATGKYRELKNLAKLYTYGIYTDAFGKNGKSDPVERNQMLADTVHLDIAKLKEYTQRVIN 696792 Query: 111 SLNWGYRVALREKK---------VVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIAT 161 L G L+ KK V+YE G I + IK + GKE + + +IAT Sbjct: 696791 KLKGGIENGLKNKKFCKNSEHVQVIYER--GHIIDKNIIKGEKS-GKE--FKVKNIVIAT 696627 Query: 162 GERPRYL-GIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMV 220 G P I D +SD+ L ++G + +E + +G ++ Sbjct: 696626 GSTPNIPDNIEVDGRTVFTSDEAVKLEGLQNYMGIIGMGIIGIEFSDIYTALGSELISFD 696447 Query: 221 RSI-LLRGFDQDMANKIGEHMEEHGIKF--IRQFVPIKVEQIEAGTPGRLRVVAQSTNSE 277 S LL D D+AN + E IK +R + ++E + AG G+ + SE Sbjct: 696446 YSPQLLPLLDADVAN----YFERVFIKSKPMRVHLNTRIEYVRAGGGGQPVTIGHRERSE 696279 Query: 278 -----------EIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTD------ 320 +I E ++ ++A GR T +GLE + KI K G + V + Sbjct: 696278 GEGDTPGYAANQIRETHVDSCLVATGRKPNTNNMGLEKL--KIRTKRGYVQVDEHLRVQR 696105 Query: 321 EEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQ-RLYAGSTVKCD------------- 366 E+Q +I+ IGD ++ + QA +++ G +K D Sbjct: 696104 EDQGVYNHIFCIGDANGRQMLAHTASHQALKVVDWIEAKGGEALKSDPSNGSHSDWASKP 695925 Query: 367 --YENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWP--------LEWTIPSR 416 Y N+P+ +T E GL+E++A + EN+ V S++ + + PS Sbjct: 695924 IIYRNIPSVCYTTPELAFVGLTEKEAKQLHPPENVGVETSFYKANSKVLCEHSDVSFPSL 695745 Query: 417 DNNKCYAKIICNT-------------KDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKK 463 N Y + NT KD++ ++G ++G A + AL L+ Sbjct: 695744 SKNNSYNRGKYNTVDHTTGMVKIVFLKDSKEILGMFIVGSYASILIHEGVLALNLKLSAV 695565 Query: 464 QLDSTIGIHPVCAEVF 479 L + HP +EV Sbjct: 695564 DLAHMVHSHPTISEVL 695517 >Plasmodium_vivax_SaI-1|ctg_7061|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR Length = 984623 Score = 95.1 bits (235), Expect = 9e-20, Method: Composition-based stats. Identities = 131/506 (25%), Positives = 231/506 (45%), Gaps = 32/506 (6%) Frame = +3 Query: 11 YDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKK-L 69 + YD+I+IGGG GG + AQ K+ VL+ + LGGTC+N GCIP K L Sbjct: 55089 HSYDVIVIGGGPGGYVCSIRCAQ--NKLNVLN------VNEDKKLGGTCLNRGCIPSKAL 55244 Query: 70 MHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYEN 129 +H A +A + G ++ +V D + + + +G+L G + KV + Sbjct: 55245 LHIAHKYYEAKNKFKQSGIIID-SVHLDVEAIHKQKNKCMGNLADGITYLYKTNKVNHLV 55421 Query: 130 AYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIP------------------ 171 +G + + + N++GKEK+ +AER +IATG +P + IP Sbjct: 55422 GHGSIVDGNTV-LVNSEGKEKLVTAERIVIATGSKP--IEIPLKKLNEDTAKEAETVEEL 55592 Query: 172 --GDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVM-VRSILLRGF 228 D + +SDD+ + P K ++G + LE A +G DVT+ S L Sbjct: 55593 LQYDHQVIQTSDDILNFKKIPKKISIIGGGVIGLEIGSVFAKMGSDVTIFEYNSRLCTFL 55772 Query: 229 DQDMANKIGEHMEEHGIKFI--RQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNT 286 D D++ + + +E+ IKF V V+ EA + A++ ++EI + + Sbjct: 55773 DADVSKVLQKTLEKVKIKFAFNSSVVGGSVQNGEA------TLFAKNAKTKEIQKVTSDV 55934 Query: 287 VMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVA 346 V++ +GR + LE + V++ + + P I AIGD + D L A Sbjct: 55935 VLVCVGRRPNFDDLNLEKLNVQLGQNKRLQVDASFGVASHPTIKAIGDAI-DGPMLAHKA 56111 Query: 347 IQAGRLLAQRLYAGSTVK------CDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIE 400 + G +LA L + +K +Y+ VP+ ++T E + GL+EE+ ++ N+ Sbjct: 56112 EEEGYILANILLSELKLKKPKKSHLNYDLVPSVIYTHPEVASVGLNEERCKQR----NLP 56279 Query: 401 VYHSYFWPLEWTIPSR--DNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKC 458 Y + +P SR D+ K++ + N +++G ++G NA ++ + + Sbjct: 56280 -YKAVTFPFAANSRSRTIDDFDGVIKLLVESNSN-KILGSQIVGNNASDLILPLSIYVAN 56453 Query: 459 GLTKKQLDSTIGIHPVCAEVFTTLSV 484 G + K L I HP +EV +++ Sbjct: 56454 GGSSKSLSKVIYAHPTFSEVIKEVAL 56531 Database: genome.fa Posted date: Mar 10, 2008 12:26 PM Number of letters in database: 26,957,458 Number of sequences in database: 2809 Lambda K H 0.319 0.137 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2809 Number of Hits to DB: 15,939,791 Number of extensions: 250673 Number of successful extensions: 1038 Number of sequences better than 10.0: 5 Number of HSP's gapped: 1026 Number of HSP's successfully gapped: 9 Length of query: 499 Length of database: 8,985,819 Length adjustment: 103 Effective length of query: 396 Effective length of database: 8,696,492 Effective search space: 3443810832 Effective search space used: 3443810832 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 47 (22.7 bits) # TBLASTN 2.2.17 [Aug-26-2007] # Query: SPP00000034_1.0 # Protein # Thioredoxin reductase 1 (TR1) # Homo sapiens # Database: genome.fa # Fields: Query id, Subject id, % identity, alignment length, mismatches, gap openings, q. start, q. end, s. start, s. end, e-value, bit score SPP00000034_1.0 Plasmodium_vivax_SaI-1|ctg_7052|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR 44.89 499 257 7 11 491 904347 902878 9e-120 427 SPP00000034_1.0 Plasmodium_vivax_SaI-1|ctg_6877|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR 28.66 478 278 13 68 482 1210841 1212232 3e-48 189 SPP00000034_1.0 Plasmodium_vivax_SaI-1|ctg_6877|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR 86.67 15 2 0 55 69 1210574 1210618 0.094 35.4 SPP00000034_1.0 Plasmodium_vivax_SaI-1|ctg_6950|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR 24.82 556 330 18 12 479 697130 695517 6e-20 95.5 SPP00000034_1.0 Plasmodium_vivax_SaI-1|ctg_7061|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR 25.89 506 343 16 11 484 55089 56531 9e-20 95.1