TBLASTN 2.2.18 (Mar-02-2008) Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: XDDRNYUG01R Database: Database of GenBank+EMBL+DDBJ sequences from EST Divisions 50,374,955 sequences; 27,748,504,539 total letters Query= subseq(241000,6000).[2838:3536].sp.tr Length=233 Score E Sequences producing significant alignments: (Bits) Value gb|CX018821.1| EST937140 Field isolate cDNA library Plasmodiu... 395 5e-111 gb|CV633365.1| EST912118 Field isolate cDNA library Plasmodiu... 298 9e-82 gb|CX020828.1| EST939147 Field isolate cDNA library Plasmodiu... 296 2e-81 gb|CV648400.1| EST927153 Field isolate cDNA library Plasmodiu... 258 6e-70 gb|CV640980.1| EST919733 Field isolate cDNA library Plasmodiu... 221 2e-58 gb|CV632971.1| EST911724 Field isolate cDNA library Plasmodiu... 218 7e-58 gb|CV633364.1| EST912117 Field isolate cDNA library Plasmodiu... 199 5e-52 gb|CV644362.1| EST923115 Field isolate cDNA library Plasmodiu... 168 9e-43 gb|CV648448.1| EST927201 Field isolate cDNA library Plasmodiu... 27.3 2.7 gb|CV639899.1| EST918652 Field isolate cDNA library Plasmodiu... 25.8 9.2 ALIGNMENTS >gb|CX018821.1| EST937140 Field isolate cDNA library Plasmodium vivax cDNA clone PVMHS57 5' end, mRNA sequence. Length=867 Score = 395 bits (1014), Expect = 5e-111, Method: Compositional matrix adjust. Identities = 209/212 (98%), Positives = 209/212 (98%), Gaps = 0/212 (0%) Frame = +2 Query 1 AKMYYlklflkvllllflSYDFIILKSGTSKALHGGGNFLKESYEFLFVQKDTLPSYINR 60 AKMYYLKLFLKVLL LFLSY FIILKSGTSKALHGGGNFLKESYEFLFVQKDTLPSYINR Sbjct 230 AKMYYLKLFLKVLLFLFLSYGFIILKSGTSKALHGGGNFLKESYEFLFVQKDTLPSYINR 409 Query 61 DNQISIYFCKSXQSHYVLSRIKKYFDLLNHGEDTEIYFEEDSYQAGNSSTGDEKYVIFLR 120 DNQISIYFCKS QSHYVLSRIKKYFDLLNHGEDTEIYFEEDSYQAGNSSTGDEKYVIFLR Sbjct 410 DNQISIYFCKS*QSHYVLSRIKKYFDLLNHGEDTEIYFEEDSYQAGNSSTGDEKYVIFLR 589 Query 121 NIKAALIYRLICRFILFIYILISATLIFPHYLKAYIPSILLNSRRFNEMFENMQQKKLMV 180 NIKAALIYRLICRFILFIYILISATLIFPHYLKAYIPSILLNSRRFNEMFENMQQKKLMV Sbjct 590 NIKAALIYRLICRFILFIYILISATLIFPHYLKAYIPSILLNSRRFNEMFENMQQKKLMV 769 Query 181 LGMMFFSYNIIYGMLCNTSVIHVYQNRNLIYD 212 LGMMFFSYNIIYGMLCNTSVIHVYQNRNLIYD Sbjct 770 LGMMFFSYNIIYGMLCNTSVIHVYQNRNLIYD 865 >gb|CV633365.1| EST912118 Field isolate cDNA library Plasmodium vivax cDNA clone PVMA411 3' end, mRNA sequence. Length=693 Score = 298 bits (762), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 144/145 (99%), Positives = 144/145 (99%), Gaps = 0/145 (0%) Frame = -2 Query 89 NHGEDTEIYFEEDSYQAGNSSTGDEKYVIFLRNIKAALIYRLICRFILFIYILISATLIF 148 NHGEDTEIYFEEDSYQAGNSSTGDEKYVIFLRNIKAALIYRLICRFILFIYILISATLIF Sbjct 692 NHGEDTEIYFEEDSYQAGNSSTGDEKYVIFLRNIKAALIYRLICRFILFIYILISATLIF 513 Query 149 PHYLKAYIPSILLNSRRFNEMFENMQQKKLMVLGMMFFSYNIIYGMLCNTSVIHVYQNRN 208 PHYLKAYIPSILLNSRRFNEMFENMQQKKLMVLGMMFFSYNIIYGMLCN SVIHVYQNRN Sbjct 512 PHYLKAYIPSILLNSRRFNEMFENMQQKKLMVLGMMFFSYNIIYGMLCNPSVIHVYQNRN 333 Query 209 LIYDDYYADHLFVQRLRENMTHVPG 233 LIYDDYYADHLFVQRLRENMTHVPG Sbjct 332 LIYDDYYADHLFVQRLRENMTHVPG 258 >gb|CX020828.1| EST939147 Field isolate cDNA library Plasmodium vivax cDNA clone PVMIM56 5' end, mRNA sequence. Length=846 Score = 296 bits (758), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 161/163 (98%), Positives = 161/163 (98%), Gaps = 0/163 (0%) Frame = +3 Query 1 AKMYYlklflkvllllflSYDFIILKSGTSKALHGGGNFLKESYEFLFVQKDTLPSYINR 60 AKMYYLKLFLKVLL LFLSYDFIILKSGTSKALHGGGNFLKESYEFLFVQKDTLPSYINR Sbjct 357 AKMYYLKLFLKVLLFLFLSYDFIILKSGTSKALHGGGNFLKESYEFLFVQKDTLPSYINR 536 Query 61 DNQISIYFCKSXQSHYVLSRIKKYFDLLNHGEDTEIYFEEDSYQAGNSSTGDEKYVIFLR 120 DNQISIYFCKS QSHYVLSRIKKYFDLLNHGEDTEIYFEEDSYQAGNSSTGDEKYVIFLR Sbjct 537 DNQISIYFCKS*QSHYVLSRIKKYFDLLNHGEDTEIYFEEDSYQAGNSSTGDEKYVIFLR 716 Query 121 NIKAALIYRLICRFILFIYILISATLIFPHYLKAYIPSILLNS 163 NIKAALIYRLICRFILFIYILISATLIFPHYLKAYIPSILLNS Sbjct 717 NIKAALIYRLICRFILFIYILISATLIFPHYLKAYIPSILLNS 845 >gb|CV648400.1| EST927153 Field isolate cDNA library Plasmodium vivax cDNA clone PVMGV75 5' end, mRNA sequence. Length=788 Score = 258 bits (660), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 142/144 (98%), Positives = 142/144 (98%), Gaps = 0/144 (0%) Frame = +2 Query 1 AKMYYlklflkvllllflSYDFIILKSGTSKALHGGGNFLKESYEFLFVQKDTLPSYINR 60 AKMYYLKLFLKVLL LFLSYDFIILKSGTSKALHGGGNFLKESYEFLFVQKDTLPSYINR Sbjct 356 AKMYYLKLFLKVLLFLFLSYDFIILKSGTSKALHGGGNFLKESYEFLFVQKDTLPSYINR 535 Query 61 DNQISIYFCKSXQSHYVLSRIKKYFDLLNHGEDTEIYFEEDSYQAGNSSTGDEKYVIFLR 120 DNQISIYFCKS QSHYVLSRIKKYFDLLNHGEDTEIYFEEDSYQAGNSSTGDEKYVIFLR Sbjct 536 DNQISIYFCKS*QSHYVLSRIKKYFDLLNHGEDTEIYFEEDSYQAGNSSTGDEKYVIFLR 715 Query 121 NIKAALIYRLICRFILFIYILISA 144 NIKAALIYRLICRFILFIYILISA Sbjct 716 NIKAALIYRLICRFILFIYILISA 787 >gb|CV640980.1| EST919733 Field isolate cDNA library Plasmodium vivax cDNA clone PVMDX52 5' end, mRNA sequence. Length=732 Score = 221 bits (562), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 122/124 (98%), Positives = 122/124 (98%), Gaps = 0/124 (0%) Frame = +2 Query 1 AKMYYlklflkvllllflSYDFIILKSGTSKALHGGGNFLKESYEFLFVQKDTLPSYINR 60 AKMYYLKLFLKVLL LFLSYDFIILKSGTSKALHGGGNFLKESYEFLFVQKDTLPSYINR Sbjct 359 AKMYYLKLFLKVLLFLFLSYDFIILKSGTSKALHGGGNFLKESYEFLFVQKDTLPSYINR 538 Query 61 DNQISIYFCKSXQSHYVLSRIKKYFDLLNHGEDTEIYFEEDSYQAGNSSTGDEKYVIFLR 120 DNQISIYFCKS QSHYVLSRIKKYFDLLNHGEDTEIYFEEDSYQAGNSSTGDEKYVIFLR Sbjct 539 DNQISIYFCKS*QSHYVLSRIKKYFDLLNHGEDTEIYFEEDSYQAGNSSTGDEKYVIFLR 718 Query 121 NIKA 124 NIKA Sbjct 719 NIKA 730 >gb|CV632971.1| EST911724 Field isolate cDNA library Plasmodium vivax cDNA clone PVMA094 5' end, mRNA sequence. Length=542 Score = 218 bits (556), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 121/123 (98%), Positives = 121/123 (98%), Gaps = 0/123 (0%) Frame = +2 Query 1 AKMYYlklflkvllllflSYDFIILKSGTSKALHGGGNFLKESYEFLFVQKDTLPSYINR 60 AKMYYLKLFLKVLL LFLSYDFIILKSGTSKALHGGGNFLKESYEFLFVQKDTLPSYINR Sbjct 173 AKMYYLKLFLKVLLFLFLSYDFIILKSGTSKALHGGGNFLKESYEFLFVQKDTLPSYINR 352 Query 61 DNQISIYFCKSXQSHYVLSRIKKYFDLLNHGEDTEIYFEEDSYQAGNSSTGDEKYVIFLR 120 DNQISIYFCKS QSHYVLSRIKKYFDLLNHGEDTEIYFEEDSYQAGNSSTGDEKYVIFLR Sbjct 353 DNQISIYFCKS*QSHYVLSRIKKYFDLLNHGEDTEIYFEEDSYQAGNSSTGDEKYVIFLR 532 Query 121 NIK 123 NIK Sbjct 533 NIK 541 >gb|CV633364.1| EST912117 Field isolate cDNA library Plasmodium vivax cDNA clone PVMA411 5' end, mRNA sequence. Length=529 Score = 199 bits (506), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 111/113 (98%), Positives = 111/113 (98%), Gaps = 0/113 (0%) Frame = +3 Query 1 AKMYYlklflkvllllflSYDFIILKSGTSKALHGGGNFLKESYEFLFVQKDTLPSYINR 60 AKMYYLKLFLKVLL LFLSYDFIILKSGTSKALHGGGNFLKESYEFLFVQKDTLPSYINR Sbjct 189 AKMYYLKLFLKVLLFLFLSYDFIILKSGTSKALHGGGNFLKESYEFLFVQKDTLPSYINR 368 Query 61 DNQISIYFCKSXQSHYVLSRIKKYFDLLNHGEDTEIYFEEDSYQAGNSSTGDE 113 DNQISIYFCKS QSHYVLSRIKKYFDLLNHGEDTEIYFEEDSYQAGNSSTGDE Sbjct 369 DNQISIYFCKS*QSHYVLSRIKKYFDLLNHGEDTEIYFEEDSYQAGNSSTGDE 527 >gb|CV644362.1| EST923115 Field isolate cDNA library Plasmodium vivax cDNA clone PVMF995 5' end, mRNA sequence. Length=700 Score = 168 bits (426), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 80/88 (90%), Positives = 83/88 (94%), Gaps = 0/88 (0%) Frame = +3 Query 26 KSGTSKALHGGGNFLKESYEFLFVQKDTLPSYINRDNQISIYFCKSXQSHYVLSRIKKYF 85 ++G +K GGGNFLKESYEFLFVQKDTLPSYINRDNQISIYFCKS QSHYVLSRIKKYF Sbjct 435 RAGLAKPCMGGGNFLKESYEFLFVQKDTLPSYINRDNQISIYFCKS*QSHYVLSRIKKYF 614 Query 86 DLLNHGEDTEIYFEEDSYQAGNSSTGDE 113 DLLNHGEDTEIYFEEDSYQAGNSSTGDE Sbjct 615 DLLNHGEDTEIYFEEDSYQAGNSSTGDE 698 Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/55 (70%), Positives = 39/55 (70%), Gaps = 0/55 (0%) Frame = +2 Query 1 AKMYYlklflkvllllflSYDFIILKSGTSKALHGGGNFLKESYEFLFVQKDTLP 55 AKMYYLKLFLKVLL LFLSYDFIILKSGTSKALHGGG K K P Sbjct 359 AKMYYLKLFLKVLLFLFLSYDFIILKSGTSKALHGGGKLFKRKLRIFIRPKGHTP 523 >gb|CV648448.1| EST927201 Field isolate cDNA library Plasmodium vivax cDNA clone PVMGW36 5' end, mRNA sequence. Length=728 Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust. Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 7/69 (10%) Frame = +2 Query 92 EDTEIYFEEDSYQAGNSSTGDEKYVIFLRNIKAALIYRLICRFILFIYILISATLIFPHY 151 ++T + D + G+ G R K + +C F L + +L+ LI+P Sbjct 107 KNTPARYGADVQEGGSPCGGT-------RT*KCTFLRLFMCAFCLCMNVLVVCLLIYPPR 265 Query 152 LKAYIPSIL 160 + + P+IL Sbjct 266 V*SDAPAIL 292 >gb|CV639899.1| EST918652 Field isolate cDNA library Plasmodium vivax cDNA clone PVMDH79 5' end, mRNA sequence. Length=738 Score = 25.8 bits (55), Expect = 9.2, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 8/54 (14%) Frame = +1 Query 106 GNSSTGDEKYVIFLRNIKAALIYRLICRFILFIYILISATLIFPHYLKAYIPSI 159 G + Y F+ + ALI+ LI FILF Y ++ PH L AY P + Sbjct 475 GQAWVASHYYFFFI--LIFALIFTLIFAFILFFYFIVC-----PH-LCAYAPCV 612 Database: Database of GenBank+EMBL+DDBJ sequences from EST Divisions Posted date: Mar 10, 2008 5:58 PM Number of letters in database: 15,446,577 Number of sequences in database: 22,238 Lambda K H 0.330 0.144 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 22238 Number of Hits to DB: 0 Number of extensions: 0 Number of successful extensions: 0 Number of sequences better than 100: 0 Number of HSP's better than 100 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 233 Length of database: 15446577 Length adjustment: 89 Effective length of query: 144 Effective length of database: 3169677 Effective search space: 456433488 Effective search space used: 456433488 T: 13 A: 40 X1: 15 (7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (20.0 bits) S2: 46 (22.3 bits) # TBLASTN 2.2.18 (Mar-02-2008) # Iteration: 0 # Query: subseq(241000,6000).[2838:3536].sp.tr # RID: XDDRNYUG01R # Database: est # Fields: query id, subject ids, % identity, % positives, query/sbjct frames, alignment length, mismatches, gap opens, q. start, q. end, s. start, s. end, evalue, bit score # 11 hits found subseq(241000,6000).[2838:3536].sp.tr gi|56957862|gb|CX018821.1| 98.58 98.58 0/2 212 3 0 1 212 230 865 5e-111 395 subseq(241000,6000).[2838:3536].sp.tr gi|56940183|gb|CV633365.1| 99.31 99.31 0/-2 145 1 0 89 233 692 258 9e-82 298 subseq(241000,6000).[2838:3536].sp.tr gi|56959869|gb|CX020828.1| 98.77 98.77 0/3 163 2 0 1 163 357 845 2e-81 296 subseq(241000,6000).[2838:3536].sp.tr gi|56955218|gb|CV648400.1| 98.61 98.61 0/2 144 2 0 1 144 356 787 6e-70 258 subseq(241000,6000).[2838:3536].sp.tr gi|56947798|gb|CV640980.1| 98.39 98.39 0/2 124 2 0 1 124 359 730 2e-58 221 subseq(241000,6000).[2838:3536].sp.tr gi|56939789|gb|CV632971.1| 98.37 98.37 0/2 123 2 0 1 123 173 541 7e-58 218 subseq(241000,6000).[2838:3536].sp.tr gi|56940182|gb|CV633364.1| 98.23 98.23 0/3 113 2 0 1 113 189 527 5e-52 199 subseq(241000,6000).[2838:3536].sp.tr gi|56951180|gb|CV644362.1| 90.91 94.32 0/3 88 8 0 26 113 435 698 9e-43 168 subseq(241000,6000).[2838:3536].sp.tr gi|56951180|gb|CV644362.1| 70.91 70.91 0/2 55 16 0 1 55 359 523 3e-07 50.4 subseq(241000,6000).[2838:3536].sp.tr gi|56955266|gb|CV648448.1| 23.19 43.48 0/2 69 46 1 92 160 107 292 2.7 27.3 subseq(241000,6000).[2838:3536].sp.tr gi|56946717|gb|CV639899.1| 35.19 48.15 0/1 54 27 3 106 159 475