TBLASTN 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= sel2 plasmodium falciparum (229 letters) Database: genome.fa 2809 sequences; 26,957,458 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Plasmodium_vivax_SaI-1|ctg_6878|2005-09-01|ds-DNA|Plasmodium_viv... 172 2e-43 Plasmodium_vivax_SaI-1|ctg_6977|2005-09-01|ds-DNA|Plasmodium_viv... 29 2.3 Plasmodium_vivax_SaI-1|ctg_7061|2005-09-01|ds-DNA|Plasmodium_viv... 28 4.7 Plasmodium_vivax_SaI-1|ctg_7052|2005-09-01|ds-DNA|Plasmodium_viv... 28 4.8 Plasmodium_vivax_SaI-1|ctg_7202|2005-09-01|ds-DNA|Plasmodium_viv... 27 8.5 >Plasmodium_vivax_SaI-1|ctg_6878|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR Length = 261552 Score = 172 bits (435), Expect = 2e-43, Method: Composition-based stats. Identities = 101/230 (43%), Positives = 143/230 (62%), Gaps = 4/230 (1%) Frame = -2 Query: 2 KAYYXXXXXXXXXXXFFSYDFIFLKNEDNIIKGKGSSFLKSSYELLFVQKDVLLPHIKKN 61 K YY F SYDFI LK+ + G +FLK SYE LFVQKD L +I ++ Sbjct: 244160 KMYYLKLFLKVLLLLFLSYDFIILKSGTSKALHGGGNFLKESYEFLFVQKDTLPSYINRD 243981 Query: 62 NQISIFLCRSXQSQYIINKIKNYFDILNKGRETEIYFENNNYIVDN----DQKYILFLMS 117 NQISI+ C+S QS Y++++IK YFD+LN G +TEIYFE ++Y N D+KY++FL + Sbjct: 243980 NQISIYFCKS*QSHYVLSRIKKYFDLLNHGEDTEIYFEEDSYQAGNSSTGDEKYVIFLRN 243801 Query: 118 IQPPXXXXXXXXXXXXXXXXXXXXXXXPKHCEFFIPSFLLNNTKFIETFEKMRKKKIIVS 177 I+ P + + +IPS LLN+ +F E FE M++KK++V Sbjct: 243800 IKAALIYRLICRFILFIYILISATLIFPHYLKAYIPSILLNSRRFNEMFENMQQKKLMVL 243621 Query: 178 SIMFLAYNIIYSILCNTNEIHVYQNKNLIYKDYFNEYFFIQTLRTNLKNI 227 +MF +YNIIY +LCNT+ IHVYQN+NLIY DY+ ++ F+Q LR N+ ++ Sbjct: 243620 GMMFFSYNIIYGMLCNTSVIHVYQNRNLIYDDYYADHLFVQRLRENMTHV 243471 >Plasmodium_vivax_SaI-1|ctg_6977|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR Length = 1923364 Score = 29.3 bits (64), Expect = 2.3, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 7/52 (13%) Frame = +1 Query: 184 YNIIYSILCNTNEIHVYQNKNLIYKDYFNE------YFFIQTL-RTNLKNIH 228 Y +IY + C + I +NKN +K+Y N +FF++ L + +L+N++ Sbjct: 1117666 YTVIY-LCCKMSIIKRLKNKNFDHKNYLNSSGEKSIFFFLENLDKHDLQNVN 1117818 >Plasmodium_vivax_SaI-1|ctg_7061|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR Length = 984623 Score = 28.1 bits (61), Expect = 4.7, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 28/44 (63%) Frame = -2 Query: 73 QSQYIINKIKNYFDILNKGRETEIYFENNNYIVDNDQKYILFLM 116 ++ Y ++++KN + +N I +ENNNY +D+ +Y LFL+ Sbjct: 102400 EALYHLDELKNVNESINGELMKYIQYENNNYTIDS-HRYDLFLI 102272 >Plasmodium_vivax_SaI-1|ctg_7052|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR Length = 1198945 Score = 28.1 bits (61), Expect = 4.8, Method: Composition-based stats. Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = -1 Query: 44 YELLFVQKDVLLPHIKKNNQISIFLC 69 YE QK LL H+K +ISI+LC Sbjct: 1157692 YEHWAGQKRALLLHLKSGQRISIYLC 1157615 >Plasmodium_vivax_SaI-1|ctg_7202|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR Length = 2132789 Score = 27.3 bits (59), Expect = 8.5, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 23/38 (60%) Frame = +1 Query: 192 CNTNEIHVYQNKNLIYKDYFNEYFFIQTLRTNLKNIHK 229 C ++ H K +IY+ + N Y F++ RTNLKNI + Sbjct: 2131633 CLSSRSHRKNYKTIIYEIHLNMYSFLKIKRTNLKNIKR 2131746 Database: genome.fa Posted date: Mar 10, 2008 4:00 PM Number of letters in database: 26,957,458 Number of sequences in database: 2809 Lambda K H 0.329 0.144 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2809 Number of Hits to DB: 8,023,431 Number of extensions: 154308 Number of successful extensions: 1533 Number of sequences better than 10.0: 29 Number of HSP's gapped: 1531 Number of HSP's successfully gapped: 33 Length of query: 229 Length of database: 8,985,819 Length adjustment: 95 Effective length of query: 134 Effective length of database: 8,718,964 Effective search space: 1168341176 Effective search space used: 1168341176 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 44 (21.6 bits) # TBLASTN 2.2.17 [Aug-26-2007] # Query: sel2 plasmodium falciparum # Database: genome.fa # Fields: Query id, Subject id, % identity, alignment length, mismatches, gap openings, q. start, q. end, s. start, s. end, e-value, bit score sel2 Plasmodium_vivax_SaI-1|ctg_6878|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR 52.17 230 106 1 2 227 244160 243471 2e-43 172 sel2 Plasmodium_vivax_SaI-1|ctg_6977|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR 30.77 52 29 3 184 228 1117666 1117818 2.3 29.3 sel2 Plasmodium_vivax_SaI-1|ctg_7061|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR 34.09 44 29 1 73 116 102400 102272 4.7 28.1 sel2 Plasmodium_vivax_SaI-1|ctg_7052|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR 50.00 26 13 0 44 69 1157692 1157615 4.8 28.1 sel2 Plasmodium_vivax_SaI-1|ctg_7202|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR 39.47 38 23 0 192 229 2131633 2131746 8.5 27.3