TBLASTN 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= traduccio (135 letters) Database: PvivaxAllTranscripts_plasmoDB-5.4.fasta 5446 sequences; 11,868,575 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Plasmodium_vivax_SaI-1|ctg_6977|Pv092460|Annotation|Plasmodium_v... 75 4e-15 Plasmodium_vivax_SaI-1|ctg_6950|Pv090020|Annotation|Plasmodium_v... 27 1.2 Plasmodium_vivax_SaI-1|ctg_7169|Pv114120|Annotation|Plasmodium_v... 27 2.1 Plasmodium_vivax_SaI-1|ctg_7164|Pv110910|Annotation|Plasmodium_v... 26 2.9 Plasmodium_vivax_SaI-1|ctg_7179|Pv117365|Annotation|Plasmodium_v... 26 3.3 Plasmodium_vivax_SaI-1|ctg_6871|Pv083505|Annotation|Plasmodium_v... 25 4.6 Plasmodium_vivax_SaI-1|ctg_6871|Pv082360|Annotation|Plasmodium_v... 25 5.4 Plasmodium_vivax_SaI-1|ctg_6877|Pv084395|Annotation|Plasmodium_v... 25 5.8 Plasmodium_vivax_SaI-1|ctg_6977|Pv092620|Annotation|Plasmodium_v... 25 7.5 Plasmodium_vivax_SaI-1|ctg_7202|Pv122465|Annotation|Plasmodium_v... 25 8.5 Plasmodium_vivax_SaI-1|ctg_6877|Pv085180|Annotation|Plasmodium_v... 25 8.9 >Plasmodium_vivax_SaI- 1|ctg_6977|Pv092460|Annotation|Plasmodium_vivax_TIGR|(pro cessed_transcript)subtilisin-like protease 2, putative Length = 4233 Score = 75.5 bits (184), Expect = 4e-15, Method: Composition-based stats. Identities = 34/48 (70%), Positives = 34/48 (70%) Frame = +1 Query: 1 RAPKKLDFENYGDXXXXXXXXXXXXXFVNHRAEQNWGHEAEKKDPRDX 48 RAPKKLDFENYGD FVNHRAEQNWGHEAEKKDPRD Sbjct: 4090 RAPKKLDFENYGDLIKKPLLKSPPKKFVNHRAEQNWGHEAEKKDPRD* 4233 >Plasmodium_vivax_SaI- 1|ctg_6950|Pv090020|Annotation|Plasmodium_vivax_TIGR|(pro cessed_transcript)hypothetical protein Length = 5100 Score = 27.3 bits (59), Expect = 1.2, Method: Composition-based stats. Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%) Frame = -1 Query: 92 IGCNFFFFSFSLDNVPPTH--AYKFVKRHSQ 120 +GC FFF+ FS PP H AY F H+ Sbjct: 2262 LGCKFFFYVFS----PPLHHFAYPFQVHHAH 2182 >Plasmodium_vivax_SaI- 1|ctg_7169|Pv114120|Annotation|Plasmodium_vivax_TIGR|(pr ocessed_transcript)splicing factor 3a subunit, putative Length = 651 Score = 26.6 bits (57), Expect = 2.1, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 21/43 (48%) Frame = -3 Query: 61 FAPVLLLTKAQKRVNKLWSSFFWAQKKRTTTIGCNFFFFSFSL 103 F V+ + +K + W +F +R IGC +FF FSL Sbjct: 442 FYLVVQFSARKKT*SGTWVWYFL*YLERIIRIGCRVYFFYFSL 314 >Plasmodium_vivax_SaI- 1|ctg_7164|Pv110910|Annotation|Plasmodium_vivax_TIGR|(pro cessed_transcript)DNA polymerase zeta catalytic subunit, putative Length = 5601 Score = 26.2 bits (56), Expect = 2.9, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 18/38 (47%) Frame = +2 Query: 66 LLTKAQKRVNKLWSSFFWAQKKRTTTIGCNFFFFSFSL 103 LLTK + N LWSS W R + I +F + L Sbjct: 3845 LLTKRRVMRNLLWSSRGWKASDRISAIW*RMYFCKYIL 3958 >Plasmodium_vivax_SaI- 1|ctg_7179|Pv117365|Annotation|Plasmodium_vivax_TIGR|(pro cessed_transcript)hypothetical protein Length = 6375 Score = 25.8 bits (55), Expect = 3.3, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = -1 Query: 81 FFWAQKKRTTTIGCNFFFFSFSLDNVPPTHAYKFVKRH 118 FF+ K + T GC F F+L + P +H +FVK H Sbjct: 1269 FFFCTKGTSPTAGC*EARFIFALVSEPFSH--QFVKLH 1162 >Plasmodium_vivax_SaI- 1|ctg_6871|Pv083505|Annotation|Plasmodium_vivax_TIGR|(pr ocessed_transcript)hypothetical protein Length = 1974 Score = 25.4 bits (54), Expect = 4.6, Method: Composition-based stats. Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 5/28 (17%) Frame = +1 Query: 93 GCNFFFFSFS-----LDNVPPTHAYKFV 115 G NFFFF F +VP TH KFV Sbjct: 64 GVNFFFFPFHNAVIICTHVPLTHVKKFV 147 >Plasmodium_vivax_SaI- 1|ctg_6871|Pv082360|Annotation|Plasmodium_vivax_TIGR|(pro cessed_transcript)hypothetical protein, conserved Length = 7863 Score = 25.0 bits (53), Expect = 5.4, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = -2 Query: 62 APVLLLTKAQKRVNKLWSSFFWAQKKRTTTIGCNFFFF 99 AP L T ++ R+ LWSSF + RT+ + N FF Sbjct: 5054 APSTLCTPSRTRLYLLWSSFVYL---RTSAMVTNLNFF 4950 >Plasmodium_vivax_SaI- 1|ctg_6877|Pv084395|Annotation|Plasmodium_vivax_TIGR|(pro cessed_transcript)hypothetical protein Length = 4278 Score = 25.0 bits (53), Expect = 5.8, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 4/46 (8%) Frame = -1 Query: 61 FAPVLLLTKAQK----RVNKLWSSFFWAQKKRTTTIGCNFFFFSFS 102 F P+ LL A+K RV S KK TT+ FFF SF+ Sbjct: 2418 FHPIFLLFIARKGNSKRVALRMVSICLVGKKGITTVRWKFFFVSFT 2281 >Plasmodium_vivax_SaI- 1|ctg_6977|Pv092620|Annotation|Plasmodium_vivax_TIGR|(pro cessed_transcript)myosin heavy chain subunit, putative Length = 5151 Score = 24.6 bits (52), Expect = 7.5, Method: Composition-based stats. Identities = 11/13 (84%), Positives = 11/13 (84%) Frame = -3 Query: 52 GASHTGQRAFAPV 64 G SHTGQRAF PV Sbjct: 4978 GRSHTGQRAFPPV 4940 >Plasmodium_vivax_SaI- 1|ctg_7202|Pv122465|Annotation|Plasmodium_vivax_TIGR|(pr ocessed_transcript)hypothetical protein Length = 6405 Score = 24.6 bits (52), Expect = 8.5, Method: Composition-based stats. Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = +1 Query: 41 EKKDPRDXADKGASHTGQRAFAPVLLLTKAQKRVNK 76 E++ PRD G SHTG+ +K KRV+K Sbjct: 475 EERSPRDAKHAGKSHTGEG--------SKKDKRVDK 558 >Plasmodium_vivax_SaI- 1|ctg_6877|Pv085180|Annotation|Plasmodium_vivax_TIGR|(pro cessed_transcript)hypothetical protein, conserved Length = 5883 Score = 24.6 bits (52), Expect = 8.9, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = -1 Query: 83 WAQKKRTTTIGCNFFFFSFSL 103 WA+KK + CNF F +SL Sbjct: 2625 WARKKTEASSACNFLFVFYSL 2563 Database: PvivaxAllTranscripts_plasmoDB-5.4.fasta Posted date: Mar 11, 2008 1:55 PM Number of letters in database: 11,868,575 Number of sequences in database: 5446 Lambda K H 0.326 0.136 0.445 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 5446 Number of Hits to DB: 2,130,049 Number of extensions: 35811 Number of successful extensions: 462 Number of sequences better than 10.0: 26 Number of HSP's gapped: 461 Number of HSP's successfully gapped: 26 Length of query: 135 Length of database: 3,956,191 Length adjustment: 82 Effective length of query: 53 Effective length of database: 3,509,619 Effective search space: 186009807 Effective search space used: 186009807 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 36 (18.5 bits) # TBLASTN 2.2.17 [Aug-26-2007] # Query: traduccio # Database: PvivaxAllTranscripts_plasmoDB-5.4.fasta # Fields: Query id, Subject id, % identity, alignment length, mismatches, gap openings, q. start, q. end, s. start, s. end, e-value, bit score traduccio Plasmodium_vivax_SaI-1|ctg_6977|Pv092460|Annotation|Plasmodium_vivax_TIGR|(processed_transcript)subtilisin-like 100.00 48 0 0 1 48 4090 4233 4e-15 75.5 traduccio Plasmodium_vivax_SaI-1|ctg_6950|Pv090020|Annotation|Plasmodium_vivax_TIGR|(processed_transcript)hypothetical 45.16 31 15 2 92 120 2262 2182 1.2 27.3 traduccio Plasmodium_vivax_SaI-1|ctg_7169|Pv114120|Annotation|Plasmodium_vivax_TIGR|(processed_transcript)splicing 32.56 43 29 0 61 103 442 314 2.1 26.6 traduccio Plasmodium_vivax_SaI-1|ctg_7164|Pv110910|Annotation|Plasmodium_vivax_TIGR|(processed_transcript)DNA 36.84 38 24 0 66 103 3845 3958 2.9 26.2 traduccio Plasmodium_vivax_SaI-1|ctg_7179|Pv117365|Annotation|Plasmodium_vivax_TIGR|(processed_transcript)hypothetical 39.47 38 23 1 81 118 1269 1162 3.3 25.8 traduccio Plasmodium_vivax_SaI-1|ctg_6871|Pv083505|Annotation|Plasmodium_vivax_TIGR|(processed_transcript)hypothetical 50.00 28 9 1 93 115 64 147 4.6 25.4 traduccio Plasmodium_vivax_SaI-1|ctg_6871|Pv082360|Annotation|Plasmodium_vivax_TIGR|(processed_transcript)hypothetical 39.47 38 23 1 62 99 5054 4950 5.4 25.0 traduccio Plasmodium_vivax_SaI-1|ctg_6877|Pv084395|Annotation|Plasmodium_vivax_TIGR|(processed_transcript)hypothetical 39.13 46 24 1 61 102 2418 2281 5.8 25.0 traduccio Plasmodium_vivax_SaI-1|ctg_6977|Pv092620|Annotation|Plasmodium_vivax_TIGR|(processed_transcript)myosin 84.62 13 2 0 52 64 4978 4940 7.5 24.6 traduccio Plasmodium_vivax_SaI-1|ctg_7202|Pv122465|Annotation|Plasmodium_vivax_TIGR|(processed_transcript)hypothetical 38.89 36 22 1 41 76 475 558 8.5 24.6 traduccio Plasmodium_vivax_SaI-1|ctg_6877|Pv085180|Annotation|Plasmodium_vivax_TIGR|(processed_transcript)hypothetical 47.62 21 11 0 83 103 2625 2563 8.9 24.6