- tblastn amb la proteïna predita pel genewise (en posar-li la seq proteica de P.falciparum i el genoma de P.vivax), contra els mRNAs de P. vivax.

- A partir del nt. 65 d'aquesta prot. predita hi ha un Evalue de 0.




TBLASTN 2.2.18 (Mar-02-2008)
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro 
A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David 
J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation 
of protein database search programs", Nucleic Acids 
Res. 25:3389-3402.

RID: X2R2951501R


Database: NCBI Transcript Reference Sequences
           1,298,749 sequences; 2,167,055,366 total letters
Query=  Plasmodium_vivax_TIGR.[23525:192178].sp.tr
Length=531


                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

ref|XM_001613065.1|  Plasmodium vivax SaI-1                         967    0.0  
ref|XM_001613108.1|  Plasmodium vivax SaI-1                         137    7e-33
ref|XM_001613806.1|  Plasmodium vivax SaI-1                        32.3    0.36 
ref|XM_001612962.1|  Plasmodium vivax SaI-1                        30.4    1.3  
ref|XM_001616963.1|  Plasmodium vivax SaI-1                        30.0    1.8  
ref|XM_001614247.1|  Plasmodium vivax SaI-1                        28.5    4.2  
ref|XM_001617289.1|  Plasmodium vivax SaI-1                        28.1    5.5  
ref|XM_001615362.1|  Plasmodium vivax SaI-1                        27.7    7.1  
ref|XM_001616378.1|  Plasmodium vivax SaI-1                        27.7    7.2  
ref|XM_001616862.1|  Plasmodium vivax SaI-1                        27.7    7.7  
ref|XM_001613558.1|  Plasmodium vivax SaI-1                        27.3    9.2  

ALIGNMENTS
>ref|XM_001613065.1| Plasmodium vivax SaI-1
Length=1422

 Score =  967 bits (2501),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 467/467 (100%), Positives = 467/467 (100%), Gaps = 0/467 (0%)
 Frame = +1

Query  65    ERIPHLGRGNPPEGPMGPPLKSVANKKTEPRMNQTDITKQRYTQIGDRVVKITFTSDKKK  124
             ERIPHLGRGNPPEGPMGPPLKSVANKKTEPRMNQTDITKQRYTQIGDRVVKITFTSDKKK
Sbjct  16    ERIPHLGRGNPPEGPMGPPLKSVANKKTEPRMNQTDITKQRYTQIGDRVVKITFTSDKKK  195

Query  125   RKEYKKRKQMNMLISQKRKKKKEFEKKKKMLRKMNHMIETEREKGNAYFLPKNFRQKKKT  184
             RKEYKKRKQMNMLISQKRKKKKEFEKKKKMLRKMNHMIETEREKGNAYFLPKNFRQKKKT
Sbjct  196   RKEYKKRKQMNMLISQKRKKKKEFEKKKKMLRKMNHMIETEREKGNAYFLPKNFRQKKKT  375

Query  185   KRKRLILLEKEAKQSVYSDLLGGIQNGSFERKPQTALPPMEGSPNGGREGYIRFVARKAR  244
             KRKRLILLEKEAKQSVYSDLLGGIQNGSFERKPQTALPPMEGSPNGGREGYIRFVARKAR
Sbjct  376   KRKRLILLEKEAKQSVYSDLLGGIQNGSFERKPQTALPPMEGSPNGGREGYIRFVARKAR  555

Query  245   WRAMGPTDSANCGWGQANEEGETRRDSTEGHHLEGAPTGTTGDAAQIGEEVARVKRFLLL  304
             WRAMGPTDSANCGWGQANEEGETRRDSTEGHHLEGAPTGTTGDAAQIGEEVARVKRFLLL
Sbjct  556   WRAMGPTDSANCGWGQANEEGETRRDSTEGHHLEGAPTGTTGDAAQIGEEVARVKRFLLL  735

Query  305   WGGKFPRGGVLRSGSAEWTRKGAVRPPAKEVHSQTDEINVSTHSADHADQADRGRGDPPS  364
             WGGKFPRGGVLRSGSAEWTRKGAVRPPAKEVHSQTDEINVSTHSADHADQADRGRGDPPS
Sbjct  736   WGGKFPRGGVLRSGSAEWTRKGAVRPPAKEVHSQTDEINVSTHSADHADQADRGRGDPPS  915

Query  365   RELIKERILQSETIMSYIQTTRVEKKTFINEYVDQVITEELNGMVKSFLGKLSKSQEKLH  424
             RELIKERILQSETIMSYIQTTRVEKKTFINEYVDQVITEELNGMVKSFLGKLSKSQEKLH
Sbjct  916   RELIKERILQSETIMSYIQTTRVEKKTFINEYVDQVITEELNGMVKSFLGKLSKSQEKLH  1095

Query  425   LMRTKKKRYYLGLRESYRHICIDDPKLVLLAPNIEPMTNGVFDEQVHKIICKCREKGIPL  484
             LMRTKKKRYYLGLRESYRHICIDDPKLVLLAPNIEPMTNGVFDEQVHKIICKCREKGIPL
Sbjct  1096  LMRTKKKRYYLGLRESYRHICIDDPKLVLLAPNIEPMTNGVFDEQVHKIICKCREKGIPL  1275

Query  485   VYALSKNLLGKCINKSRQSVICVVDNDSFIRECDAIVRLASSLRGMQ  531
             VYALSKNLLGKCINKSRQSVICVVDNDSFIRECDAIVRLASSLRGMQ
Sbjct  1276  VYALSKNLLGKCINKSRQSVICVVDNDSFIRECDAIVRLASSLRGMQ  1416


>ref|XM_001613108.1| Plasmodium vivax SaI-1
Length=5134

 Score =  137 bits (345),  Expect = 7e-33, Method: Compositional matrix adjust.
 Identities = 64/64 (100%), Positives = 64/64 (100%), Gaps = 0/64 (0%)
 Frame = +1

Query  1     RKNTLLVDILYGHDFYYSLSGAKEKKLKKHNIFVCYYGMHAKKANKKLVNYKKHAILKCI  60
             RKNTLLVDILYGHDFYYSLSGAKEKKLKKHNIFVCYYGMHAKKANKKLVNYKKHAILKCI
Sbjct  4324  RKNTLLVDILYGHDFYYSLSGAKEKKLKKHNIFVCYYGMHAKKANKKLVNYKKHAILKCI  4503

Query  61    KKNG  64
             KKNG
Sbjct  4504  KKNG  4515


>ref|XM_001613806.1| Plasmodium vivax SaI-1
Length=1620

 Score = 32.3 bits (72),  Expect = 0.36, Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 31/74 (41%), Gaps = 15/74 (20%)
 Frame = +3

Query  220  ALPPMEGSPNGGREGYIRFVARKARWRAMGP-------TDSANCGWGQANEEG-ETRRDS  271
            +LPP      GG  G  R    + RWR+ G            NCGW + NE G   RR +
Sbjct  399  SLPPCVSLAKGGTPGEARPTW*RQRWRSSGGGRRKNCRGKQTNCGWERTNEGGTPPRRAA  578

Query  272  TEG-------HHLE  278
            T G       HHLE
Sbjct  579  TPGQRHRKLRHHLE  620


>ref|XM_001612962.1| Plasmodium vivax SaI-1
Length=4749

 Score = 30.4 bits (67),  Expect = 1.3, Method: Compositional matrix adjust.
 Identities = 16/82 (19%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
 Frame = +1

Query  14    DFYYSLSGAKEKKLKKHNIFVCYYGMHAKKANKKLVNYKKHAILKCIKKN--GERIPHLG  71
             DF+  LS   + K+ +H+ ++ Y      +     V +    + + +++   G+ +    
Sbjct  2821  DFFSILSALLKHKIVEHDAYLLYASFLQSRGGSIQVKFVSLVLKRILEEISLGDPLRMCP  3000

Query  72    RGNPPEGPMGPPLKSVANKKTE  93
              G PP+  + PPL S+    ++
Sbjct  3001  HGAPPQAGVTPPLMSIITTSSD  3066


>ref|XM_001616963.1| Plasmodium vivax SaI-1
Length=15960

 Score = 30.0 bits (66),  Expect = 1.8, Method: Compositional matrix adjust.
 Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 14/113 (12%)
 Frame = +1

Query  401    ITEELNGMVKSFLGKLSKSQEKLHLMRTKKKRYYLGLRESYRHICIDDPKLVLLAPNIEP  460
              I E LN + ++       SQ   HL        Y  +R++Y   CI   K  +   N + 
Sbjct  13813  IVEGLNFIAENKNCGNYNSQAAYHLC------IYYFMRKNYTK-CIHYMKFFISKGNFKI  13971

Query  461    MTNGVFDEQVHKIICKCREKG-------IPLVYALSKNLLGKCINKSRQSVIC  506
                N  F++  + + CK  ++          +V  +SKN+L   ++K  + V+C
Sbjct  13972  WQNDSFNQDYYNLYCKRVQRSEFIFIKYFTIVLEVSKNVLKNVLSKINEGVMC  14130


>ref|XM_001614247.1| Plasmodium vivax SaI-1
Length=5403

 Score = 28.5 bits (62),  Expect = 4.2, Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
 Frame = +1

Query  38    GMHAKKANKKLVNYKKHAILKCIKKNGE---RIPHLGRGNPPEGPMGPPLKSVANKKT  92
             G +AK+ N+K     +  + +  K  GE   ++ HLGRG  PEG +   ++  AN+ T
Sbjct  3781  GSYAKEHNRK-----QELLSEVHKLRGEAISKVVHLGRGGYPEGEITSIIQKQANEPT  3939


>ref|XM_001617289.1| Plasmodium vivax SaI-1
Length=4776

 Score = 28.1 bits (61),  Expect = 5.5, Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 0/66 (0%)
 Frame = -1

Query  312   GGVLRSGSAEWTRKGAVRPPAKEVHSQTDEINVSTHSADHADQADRGRGDPPSRELIKER  371
             GGVL +G +   R GA+ PPA+  H     I     +  H  +   G   P   +L+ E 
Sbjct  2886  GGVLPAGGSS*QRNGALFPPARRDHPSKVLIKEDVPAHVHNVEKRNGGVKPNVHDLLAEA  2707

Query  372   ILQSET  377
              L   T
Sbjct  2706  HLAVPT  2689


>ref|XM_001615362.1| Plasmodium vivax SaI-1
Length=3018

 Score = 27.7 bits (60),  Expect = 7.1, Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 14/85 (16%)
 Frame = +1

Query  158   MNHMIETEREKGNAYFLPKNFRQKKKTKRKRLILLEKEA---KQSVYSDLLGGIQNGSFE  214
             + H+ E ER +G   F    F Q +K K    + L KE+   K  V ++L   I  G+ +
Sbjct  1087  IKHIREYERREGAPLFFF--FEQTRKVKEYFFLNLLKESFFEKGRVRAELKRAIWGGAAD  1260

Query  215   R-----KPQTAL----PPMEGSPNG  230
             +      P +A     PP EG PNG
Sbjct  1261  QYEACGAPFSAASQEEPPREGPPNG  1335


>ref|XM_001616378.1| Plasmodium vivax SaI-1
Length=2166

 Score = 27.7 bits (60),  Expect = 7.2, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 5/32 (15%)
 Frame = +1

Query  48   LVNYKKHAILKCIKKNGERIP-----HLGRGN  74
            L+ Y+K++ L C+KKNG+  P     +LG  N
Sbjct  754  LIEYQKYSQLYCVKKNGKDKPVMRYHYLGNSN  849


>ref|XM_001616862.1| Plasmodium vivax SaI-1
Length=4671

 Score = 27.7 bits (60),  Expect = 7.7, Method: Compositional matrix adjust.
 Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 0/21 (0%)
 Frame = +3

Query  293   EEVARVKRFLLLWGGKFPRGG  313
             E VA   R LL WGG+ PRGG
Sbjct  1680  EGVATQDRRLLSWGGRAPRGG  1742


>ref|XM_001613558.1| Plasmodium vivax SaI-1
Length=2084

 Score = 27.3 bits (59),  Expect = 9.2, Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
 Frame = +3

Query  60   IKKNGERIPHLGRGNPPEG-----PMGPPLKSVANKKTEPRMNQTDITKQRYTQIGDRVV  114
            I K G+ +   G+ N P G        PP+  VAN++ + ++N+  +  Q  T I  RV+
Sbjct  744  IPKGGDSV---GKKNEPSGDNHSESAPPPVDDVANEREKKKINRFYLDSQATTMIDPRVL  914



  Database: NCBI Transcript Reference Sequences
    Posted date:  Mar 6, 2008  5:48 PM
  Number of letters in database: 12,493,334
  Number of sequences in database:  5,390

Lambda     K      H
   0.316    0.134    0.390 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 5390
Number of Hits to DB: 0
Number of extensions: 0
Number of successful extensions: 0
Number of sequences better than 100: 0
Number of HSP's better than 100 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 531
Length of database: 12493334
Length adjustment: 97
Effective length of query: 434
Effective length of database: 3641614
Effective search space: 1580460476
Effective search space used: 1580460476
T: 13
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 51 (24.3 bits)