TBLASTN 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= hip_sps_vivax_1 (485 letters) Database: transcrits.fa 5446 sequences; 11,868,575 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Plasmodium_vivax_SaI-1|ctg_7052|Pv098960|Annotation|Plasmodium_v... 541 e-154 Plasmodium_vivax_SaI-1|ctg_6569|Pv000810|Annotation|Plasmodium_v... 30 1.0 Plasmodium_vivax_SaI-1|ctg_6977|Pv092860|Annotation|Plasmodium_v... 28 7.2 Plasmodium_vivax_SaI-1|ctg_6877|Pv085835|Annotation|Plasmodium_v... 28 7.6 Plasmodium_vivax_SaI-1|ctg_6991|Pv093570|Annotation|Plasmodium_v... 27 9.4 >Plasmodium_vivax_SaI- 1|ctg_7052|Pv098960|Annotation|Plasmodium_vivax_TIGR|(pro cessed_transcript)selenophosphate synthetase, ,putative Length = 3516 Score = 541 bits (1393), Expect = e-154, Method: Composition-based stats. Identities = 262/262 (100%), Positives = 262/262 (100%) Frame = +1 Query: 224 KENYLFLPKGSGSIKAGDIIITTKMFGFGFIMAAHICKKAKARWIYNCLDEMLLSNRKSG 283 KENYLFLPKGSGSIKAGDIIITTKMFGFGFIMAAHICKKAKARWIYNCLDEMLLSNRKSG Sbjct: 2728 KENYLFLPKGSGSIKAGDIIITTKMFGFGFIMAAHICKKAKARWIYNCLDEMLLSNRKSG 2907 Query: 284 LYLLQNNNAKACTDVTGFGVLGHLNEMIKCSRREIYFASQMGKKPLYSTSHKEALDGRNN 343 LYLLQNNNAKACTDVTGFGVLGHLNEMIKCSRREIYFASQMGKKPLYSTSHKEALDGRNN Sbjct: 2908 LYLLQNNNAKACTDVTGFGVLGHLNEMIKCSRREIYFASQMGKKPLYSTSHKEALDGRNN 3087 Query: 344 RVDDAQADKVMEPPMNLIGAKINLKNFIIAEGVEQCIENNIFSSMYKKNHYLCNNIINME 403 RVDDAQADKVMEPPMNLIGAKINLKNFIIAEGVEQCIENNIFSSMYKKNHYLCNNIINME Sbjct: 3088 RVDDAQADKVMEPPMNLIGAKINLKNFIIAEGVEQCIENNIFSSMYKKNHYLCNNIINME 3267 Query: 404 EASLSERYGILFDPQTSGGLMAIVERDRAERILADLKNMGYPNCSAVGEIINVQNEKFRG 463 EASLSERYGILFDPQTSGGLMAIVERDRAERILADLKNMGYPNCSAVGEIINVQNEKFRG Sbjct: 3268 EASLSERYGILFDPQTSGGLMAIVERDRAERILADLKNMGYPNCSAVGEIINVQNEKFRG 3447 Query: 464 VPLSQVSLDDYLDTSNSVYVEW 485 VPLSQVSLDDYLDTSNSVYVEW Sbjct: 3448 VPLSQVSLDDYLDTSNSVYVEW 3513 Score = 460 bits (1184), Expect = e-130, Method: Composition-based stats. Identities = 224/224 (100%), Positives = 224/224 (100%) Frame = +1 Query: 1 MYNAYQKEYERRLLVSKKTVYRVTQEEGANGTTITIIVQDDNAHKGTTSNCEAKREKVNS 60 MYNAYQKEYERRLLVSKKTVYRVTQEEGANGTTITIIVQDDNAHKGTTSNCEAKREKVNS Sbjct: 1804 MYNAYQKEYERRLLVSKKTVYRVTQEEGANGTTITIIVQDDNAHKGTTSNCEAKREKVNS 1983 Query: 61 YIKESIEKIINRNTCGGCGSKVPSNVLSNSLKGLPMYSSPNVYLGIEACDDCCIFVHSKS 120 YIKESIEKIINRNTCGGCGSKVPSNVLSNSLKGLPMYSSPNVYLGIEACDDCCIFVHSKS Sbjct: 1984 YIKESIEKIINRNTCGGCGSKVPSNVLSNSLKGLPMYSSPNVYLGIEACDDCCIFVHSKS 2163 Query: 121 KKGEESPALVQTIDFFKSFIDDEYILGEIIAIHCLSDVYSMGGTGICALCVLIVKDNIEK 180 KKGEESPALVQTIDFFKSFIDDEYILGEIIAIHCLSDVYSMGGTGICALCVLIVKDNIEK Sbjct: 2164 KKGEESPALVQTIDFFKSFIDDEYILGEIIAIHCLSDVYSMGGTGICALCVLIVKDNIEK 2343 Query: 181 KLQQRLQNILTGCCQKLKEEKCVLSGGHTCAGSENYVGLAVTGK 224 KLQQRLQNILTGCCQKLKEEKCVLSGGHTCAGSENYVGLAVTGK Sbjct: 2344 KLQQRLQNILTGCCQKLKEEKCVLSGGHTCAGSENYVGLAVTGK 2475 >Plasmodium_vivax_SaI- 1|ctg_6569|Pv000810|Annotation|Plasmodium_vivax_TIGR|(pro cessed_transcript)hypothetical protein, conserved Length = 2532 Score = 30.4 bits (67), Expect = 1.0, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 28/56 (50%) Frame = +1 Query: 84 SNVLSNSLKGLPMYSSPNVYLGIEACDDCCIFVHSKSKKGEESPALVQTIDFFKSF 139 + N++ GLP + + G+EA +C V+ + K EE + I FFK++ Sbjct: 1156 TTAFKNAVNGLPPH-----FTGLEADSECASDVYEQKKTSEECETVHAWIRFFKTY 1308 >Plasmodium_vivax_SaI- 1|ctg_6977|Pv092860|Annotation|Plasmodium_vivax_TIGR|(pr ocessed_transcript)coat protein, gamma subunit, putative Length = 3033 Score = 27.7 bits (60), Expect = 7.2, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = -2 Query: 273 DEMLLSNRKSGLYLLQNNNAKACTDVTGFGVLGH 306 DEM+ S YL++++N KA + GF +L H Sbjct: 689 DEMIFSKASLSWYLIEHSNVKA*N*IIGFLLLIH 588 >Plasmodium_vivax_SaI- 1|ctg_6877|Pv085835|Annotation|Plasmodium_vivax_TIGR|(pro cessed_transcript)hypothetical protein, conserved Length = 8490 Score = 27.7 bits (60), Expect = 7.6, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%) Frame = +1 Query: 333 SHKEALDGRNNRVDDAQADKVMEPPMNLIGAKINLKNFIIAEGVEQCIENNIFSSMYKKN 392 SH ++ D R Q K + I K+ NF I EG+ Q ++NN++ M N Sbjct: 7888 SHSDSFDEREYEKLKKQFYKKISHFQIKILKKLQKNNFKI-EGISQLVQNNVYLHMTDTN 8064 Query: 393 -HYLCNNIINM 402 HY N +++ Sbjct: 8065 MHYTNMNYLDV 8097 >Plasmodium_vivax_SaI- 1|ctg_6991|Pv093570|Annotation|Plasmodium_vivax_TIGR|(pro cessed_transcript)AAA family ATPase, putative Length = 3516 Score = 27.3 bits (59), Expect = 9.4, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 20/42 (47%) Frame = -1 Query: 127 PALVQTIDFFKSFIDDEYILGEIIAIHCLSDVYSMGGTGICA 168 P L+ FF+ + +E LGE++ + C+ +CA Sbjct: 3240 PTLLAVYPFFQFIVTEENKLGEVVVVVCICAPVVAAELSVCA 3115 Database: transcrits.fa Posted date: Mar 10, 2008 2:29 PM Number of letters in database: 11,868,575 Number of sequences in database: 5446 Lambda K H 0.318 0.135 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 5446 Number of Hits to DB: 6,823,389 Number of extensions: 105831 Number of successful extensions: 588 Number of sequences better than 10.0: 10 Number of HSP's gapped: 588 Number of HSP's successfully gapped: 12 Length of query: 485 Length of database: 3,956,191 Length adjustment: 96 Effective length of query: 389 Effective length of database: 3,433,375 Effective search space: 1335582875 Effective search space used: 1335582875 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 41 (20.4 bits) # TBLASTN 2.2.17 [Aug-26-2007] # Query: hip_sps_vivax_1 # Database: transcrits.fa # Fields: Query id, Subject id, % identity, alignment length, mismatches, gap openings, q. start, q. end, s. start, s. end, e-value, bit score hip_sps_vivax_1 Plasmodium_vivax_SaI-1|ctg_7052|Pv098960|Annotation|Plasmodium_vivax_TIGR|(processed_transcript)selenophosphate 100.00 262 0 0 224 485 2728 3513 2e-154 541 hip_sps_vivax_1 Plasmodium_vivax_SaI-1|ctg_7052|Pv098960|Annotation|Plasmodium_vivax_TIGR|(processed_transcript)selenophosphate 100.00 224 0 0 1 224 1804 2475 3e-130 460 hip_sps_vivax_1 Plasmodium_vivax_SaI-1|ctg_6569|Pv000810|Annotation|Plasmodium_vivax_TIGR|(processed_transcript)hypothetical 28.57 56 40 1 84 139 1156 1308 1.0 30.4 hip_sps_vivax_1 Plasmodium_vivax_SaI-1|ctg_6977|Pv092860|Annotation|Plasmodium_vivax_TIGR|(processed_transcript)coat 38.24 34 21 0 273 306 689 588 7.2 27.7 hip_sps_vivax_1 Plasmodium_vivax_SaI-1|ctg_6877|Pv085835|Annotation|Plasmodium_vivax_TIGR|(processed_transcript)hypothetical 29.58 71 49 2 333 402 7888 8097 7.6 27.7 hip_sps_vivax_1 Plasmodium_vivax_SaI-1|ctg_6991|Pv093570|Annotation|Plasmodium_vivax_TIGR|(processed_transcript)AAA 26.19 42 31 0 127 168 3240 3115 9.4 27.3