Command line: [exonerate -m p2g -q TR_human.fa -t TR_scaffold_11_495300-498300.fa]
Hostname: [am75278]

C4 Alignment:
------------
         Query: SPP00000034_1.0 # Protein # Thioredoxin reductase 1 (TR1) # Homo sapiens # Complete
        Target: scaffold_11:subseq(495300,3000)
         Model: protein2genome
     Raw score: 492
   Query range: 280 -> 479
  Target range: 1008 -> 1602

  281 : GluGlyGluTyrAsnThrValMetLeuAlaIleGlyArgAspAlaCysThrArgLysIleGl :  301
        |||! !  !!:!:!!||||||:!::!!|||! !||||||   ::!  !|||  !|||:!!..
        GluGluIlePheAspThrValLeuValAlaThrGlyArgIleSerAspThr***LysLeuAs
 1009 : GAAGAAATATTTGATACAGTTTTAGTTGCAACAGGAAGAATAAGTGATACCTAAAAGTTAAA : 1069

  302 : yLeuGluThrValGlyValLysIleAsnGluLysThrGlyLysIleProValThrAspGluG :  322
        !||||||! !|||||||||!!.:!:|||   |||!.!|||||||||! !  !:!!!  !!:!
        nLeuGluLysValGlyValAsnLeuAsn---LysAsnGlyLysIleLeuCysSerAlaAspA
 1070 : TCTTGAAAAAGTAGGAGTAAATTTGAAT---AAAAATGGAAAAATACTATGTTCAGCAGACG : 1129

  323 : luGlnThrAsnValProTyrIleTyrAlaIleGlyAspIleLeuGluAspLysValGluLeu :  342
        !::!!|||::!|||||| !!|||!:!||||||||||||  !:!!|||! !::!  !||||||
        spLysThrSerValProAsnIlePheAlaIleGlyAspCysValGluGlyArgProGluLeu
 1130 : ACAAAACATCTGTCCCGAATATATTTGCTATTGGTGATTGTGTAGAAGGTCGACCAGAATTA : 1189

  343 : ThrProValAlaIleGlnAlaGlyArgLeuLeuAlaGlnArgLeuTyrAlaGlySerThrVa :  363
        ||||||..!||||||:!!..!|||  !|||||||||.!.||||||!:!  !  !:!!!.!! 
        ThrProThrAlaIleLysCysGly***LeuLeuAlaAsnArgLeuPheAsnLysAlaAsnGl
 1190 : ACTCCTACAGCTATTAAGTGTGGATAGCTTTTAGCCAACAGATTGTTTAATAAGGCAAATGA : 1252

  364 : lLysCysAspTyrGluAsnValProThrThrValPheThrProLeuGluTyrGlyAlaCysG :  384
        !  !   ...|||!!: !!||| !!||||||||||||||||||||||||||||||..!  !|
        uLeuMetSerTyrAspTyrValAlaThrThrValPheThrProLeuGluTyrGlyCysIleG
 1253 : ATTAATGTCATATGACTATGTTGCTACAACTGTATTTACTCCTTTAGAATATGGTTGTATTG : 1315

  385 : lyLeuSerGluGluLysAlaValGluLysPheGlyGluGluAsnIleGluValTyrHisSer :  404
        ||! !||||||||| ! |||:!!:!!||||||||||||!!:!!.|||   ||||||||||||
        lyTyrSerGluGluAspAlaIleLysLysPheGlyGluAspLysIleThrValTyrHisSer
 1316 : GATATAGTGAAGAAGATGCAATCAAAAAGTTTGGGGAGGACAAAATTACCGTTTATCATTCA : 1375

  405 : TyrPheTrpProLeuGluTrpThr<->IleProSerArgAspAsnAsnLysCysTyrAlaLy :  424
           |||   ||||||||||||!.!   .!!  !! !!.!.....!.!.!..|||!:!|||||
        IlePheLysProLeuGluTrpAsnTyrPheGluMetHisSerGlyGluSerCysPheAlaLy
 1376 : ATATTCAAACCATTAGAGTGGAATTACTTTGAGATGCATTCAGGTGAAAGTTGCTTTGCTAA : 1438

  425 : sIleIleCysAsnThrLysAspAsnGluArgValValGlyPheHisValLeuGlyProAsnA :  445
        |:!:|||  !     !!!.:!!|||..!||||||:!!|||||||||  !|||||||||:!!|
        sLeuIleVal---LeuAsnAsnAsnArgArgValIleGlyPheHisTyrLeuGlyProHisA
 1439 : ATTGATTGTC---TTAAATAATAATCGAAGAGTTATTGGATTTCATTATCTTGGACCTCATG : 1498

  446 : laGlyGluValThrGlnGlyPheAlaAlaAlaLeuLysCysGlyLeuThrLysLysGlnLeu :  465
        |||||||||||||| !!|||!:!|||!.!|||:!!|||   |||:!!||||||:!! !!!!!
        laGlyGluValThr***GlyTyrAlaValAlaMetLysMetGlyValThrLysGlu***Phe
 1499 : CTGGAGAGGTCACTTAAGGATATGCAGTTGCTATGAAAATGGGAGTGACAAAGGAATAATTT : 1558

  466 : AspSerThrIleGlyIleHisProValCysAlaGluValPhe :  479
        |||||||||:!!||||||||||||..!|||:!!||||||!:!
        AspSerThrValGlyIleHisProThrCysSerGluValTyr
 1559 : GATTCTACAGTAGGTATTCATCCAACTTGTTCTGAAGTATAT : 1602

vulgar: SPP00000034_1.0 280 479 . scaffold_11:subseq(495300,3000) 1008 1602 + 492 M 30 90 G 1 0 M 101 303 G 0 3 M 15 45 G 1 0 M 51 153

C4 Alignment:
------------
         Query: SPP00000034_1.0 # Protein # Thioredoxin reductase 1 (TR1) # Homo sapiens # Complete
        Target: scaffold_11:subseq(495300,3000)
         Model: protein2genome
     Raw score: 310
   Query range: 140 -> 260
  Target range: 600 -> 963

 141 : LysAlaThrAsnAsnLysGlyLysGluLysIleTyrSerAlaGluArgPheLeuIleAlaThrG : 162
       |||  !|||:!!||||||||||||   :!!!    !!!!|||:!!! !.!!:!!||||||..!|
       LysLeuThrAspAsnLysGlyLysIleGluThrValArgAlaLysThrIleValIleAlaValG
 601 : AAGTTAACGGATAATAAAGGAAAAATTGAGACGGTTAGAGCTAAAACAATTGTGATTGCTGTTG : 664

 163 : lyGluArgProArgTyr<->LeuGlyIleProGlyAspLysGluTyrCysIleSerSerAspAs : 182
       ||!  ||||||  !|||     !..!||||||..!  ! !!:!!     !|||!!!||||||||
       lyGlyArgProSerTyrProGluAsnIleProAsnIle***LysLeuValIleThrSerAspAs
 665 : GAGGTAGACCATCATACCCAGAAAATATTCCAAATATTTAAAAACTGGTTATAACATCAGATGA : 727

 183 : pLeuPheSerLeuProTyrCysProGlyLysThrLeuValValGlyAlaSerTyrValAlaLeu : 203
       |||||||!!!|||  ! !   !||||||||||||||||||||||||||||||||||||||||||
       pLeuPheTrpLeu***GluAsnProGlyLysThrLeuValValGlyAlaSerTyrValAlaLeu
 728 : TTTATTTTGGTTGTAGGAGAATCCTGGAAAAACACTAGTAGTAGGTGCTTCATATGTTGCACTA : 790

 204 : GluCysAlaGlyPheLeuAlaGlyIleGlyLeuAspValThrValMetValArgSerIleLeuL : 225
       ||||||!.!|||||||||  !|||||||||  !!!:|||.!!:!!|||||||||||||||||||
       GluCysGlyGlyPheLeuHisGlyIleGlyAsnGluValAlaIleMetValArgSerIleLeuL
 791 : GAATGTGGAGGATTTCTACATGGTATTGGAAATGAAGTGGCAATTATGGTGAGAAGCATTTTAT : 856

 226 : euArgGlyPheAspGlnAspMetAlaAsnLysIleGlyGluHisMetGluGluHisGlyIleLy : 246
       |||||||||||||| !!!!:!!:|||.!.|||||||||  !:!!||||||||| ! ||||||!:
       euArgGlyPheAsp***GluIleAlaGluLysIleGlyLeuTyrMetGluGluLysGlyIleAr
 857 : TAAGAGGATTTGATTAAGAAATAGCAGAAAAGATTGGATTATACATGGAAGAGAAGGGAATAAG : 919

 247 : sPheIleArgGlnPheValProIleLysValGluGlnIleGlu : 260
       !|||||||||   ! !||||||  !! !:!!|||  !! !|||
       gPheIleArgGlyCysValProAspMetIleGluAlaThrGlu
 920 : ATTCATTAGAGGTTGTGTACCAGACATGATTGAAGCAACAGAA : 963

vulgar: SPP00000034_1.0 140 260 . scaffold_11:subseq(495300,3000) 600 963 + 310 M 27 81 G 0 3 M 93 279

C4 Alignment:
------------
         Query: SPP00000034_1.0 # Protein # Thioredoxin reductase 1 (TR1) # Homo sapiens # Complete
        Target: scaffold_11:subseq(495300,3000)
         Model: protein2genome
     Raw score: 267
   Query range: 11 -> 82
  Target range: 161 -> 374

  12 : AspTyrAspLeuIleIleIleGlyGlyGlySerGlyGlyLeuAlaAlaAlaLysGluAlaAlaG :  33
       !!:!:!||||||.!!:!!|||||||||||||||||||||||||||..!|||||| !!||||||:
       GluPheAspLeuPheValIleGlyGlyGlySerGlyGlyLeuAlaCysAlaLys***AlaAlaL
 162 : GAATTTGATCTTTTTGTAATAGGTGGTGGGTCTGGAGGTCTTGCTTGTGCGAAATAAGCAGCCA : 225

  34 : lnTyrGlyLysLysValMetValLeuAspPheValThrProThrProLeuGlyThrArgTrpGl :  54
       !!!  |||  !||||||   :!!  !|||||||||! !|||:!!||||||||||||!:!|||||
       ysLeuGlyAlaLysValAlaLeuAlaAspPheValLysProSerProLeuGlyThrLysTrpGl
 226 : AATTAGGTGCAAAAGTAGCTTTGGCTGATTTTGTGAAACCTTCTCCTTTAGGGACAAAATGGGG : 288

  55 : yLeuGlyGlyThrCysValAsnValGlyCysIleProLysLysLeuMetHisGlnAlaAlaLeu :  75
       ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||:!!  !
       yLeuGlyGlyThrCysValAsnValGlyCysIleProLysLysLeuMetHisPheAlaSerThr
 289 : ATTGGGAGGAACTTGTGTGAATGTAGGTTGTATTCCAAAAAAACTAATGCATTTTGCTTCAACC : 351

  76 : LeuGlyGlnAlaLeuGlnAsp :  82
       ||||||:!!  !  !!!.|||
       LeuGlyGluLeuArgHisAsp
 352 : TTAGGAGAATTGAGACATGAT : 374

vulgar: SPP00000034_1.0 11 82 . scaffold_11:subseq(495300,3000) 161 374 + 267 M 71 213
-- completed exonerate analysis
