genewise $Name: wise2-2-0 $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright

Query protein:       SPP00000007_1.0
Comp Matrix:         blosum62.bla
Gap open:            12
Gap extension:       2
Start/End            global
Target Sequence      subseq(236000,3000)
Strand:              forward
Start/End (protein)  global
Gene Paras:          human.gf
Codon Table:         codon.table
Subs error:          1e-05
Indel error:         1e-05
Model splice?        model
Model codon bias?    flat
Model intron bias?   tied
Null model           syn
Algorithm            623

genewise output
Score 107.73 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000007_1.0    1 MSLGRLCRLLKPALLCGALAAPGLAGTMCASRDDWRCARSMHEFSAKDI 
                     +         +P +L      P       A++     A S+++F      
                     LCCCGTALPYRPDML----RLPPFPRAAAAAQ-----ASSIYDFKVNGS 
subseq(236000,3 1927 ctttgagcctacgac    ctcctccgggggc     gttatgtagaga 
                     tggggcctcagcatt    gtcctcgccccca     ccctaatatagg 
                     cccctcacgcgtcgg    cgattcccctgag     gttccccgctcc 


SPP00000007_1.0   50 DGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRIL 
                     D    +L +++G   ++ NVAS+ G T+  Y     L+ +Y   G  +L 
                     DHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVL 
subseq(236000,3 2047 gccctgcgccagccccataggaatgtaaggtgagagctaataccgtagc 
                     aaacaatgaaagactttaatcgaggtcaggaacccctaaaaaatgtttt 
                     ccgacctcgcggcgtccccaccgccccgcccgacggaccgcgtcccgag 


SPP00000007_1.0   99 AFPCNQFGKQEPGSNEEIKEFAAG-YNVKFDMFSKICVNGDDAHPLWKW 
                     AFPCNQF  QEPG+ EE+K FA   +  +F ++ K+CVNG+  HPL+ + 
                     AFPCNQFAGQEPGTEEEVKSFACTRFKAEFPIMEKVCVNGEHEHPLYHY 
subseq(236000,3 2194 gtctactggcgcgaggggaatgtactaggtcaagagtgaggcgccctct 
                     ctcgaatcgaacgcaaatagtcgcgtacatcttaatgtagaaaactaaa 
                     gcgccgcctggtagggggatcccgtcgtgcttgggctcccgcgcggtcc 


SPP00000007_1.0  147 MKIQPKGKGILGNA-IKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLP 
                     +K   KG  ILG   +KWNFT FL+DK+G  V R+ P      IEK L  
                     LKNTCKG--ILGTTLVKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLL 
subseq(236000,3 2341 taaatag  acgaacgatatagtcggaggcggtctgcggagtgagaatc 
                     taacgag  ttgccttagatcctttaaagactggtccgcctcataaatt 
                     ggcgcgt  tccggtgggccggcggcgcctcgccctctgggcacggggg 


SPP00000007_1.0  195 HYF                                               
                       +                                               
                     PLL                                               
subseq(236000,3 2482 ccc                                               
                     ctt                                               
                     gag                                               


//
Gene 1
Gene 1927 2490 
  Exon 1927 2490 phase 0
//