TBLASTN 2.0MP-WashU [10-May-2005] [linux26-i686-ILP32F64 2005-05-10T21:11:22] Copyright (C) 1996-2005 Washington University, Saint Louis, Missouri USA. All Rights Reserved. Reference: Gish, W. (1996-2005) http://blast.wustl.edu Query= gi_4506887_ref_NP_003000.1__selenoprotein_W__1__Homo_sapiens__ (87 letters) Database: ego 362,065 sequences; 518,504,102 total letters. Searching....10....20....30....40....50....60....70....80....90....100% done Smallest Sum Reading High Probability Sequences producing High-scoring Segment Pairs: Frame Score P(N) N human|THC1942790 +2 440 1.6e-40 1 potato|TC91192 +2 440 2.0e-40 1 pig|TC104447 +1 418 4.4e-38 1 cattle|TC188469 +2 399 4.4e-36 1 mouse|TC1091191 +2 386 1.0e-34 1 rat|TC437989 +3 386 1.1e-34 1 zfish|TC208413 +2 270 2.0e-22 1 xenopus|TC203747 +1 266 6.4e-22 1 dog|TC7132 +3 256 1.0e-20 1 g_gallus|TC80314 +1 148 2.2e-19 2 s_mansoni|TC16998 +3 240 3.4e-19 1 xenopus|TC196861 +2 117 1.1e-05 1 o_latipes|TC20819 +3 106 0.00019 1 zfish|TC208879 +3 107 0.00020 1 dog|TC6968 +3 99 0.00090 1 rat|TC441257 +2 99 0.00092 1 cattle|TC206992 +2 99 0.00095 1 human|THC2002357 +1 99 0.0012 1 pig|TC104785 +3 99 0.0015 1 mouse|TC1102562 +3 99 0.0015 1 r_trout|TC36179 +2 95 0.0041 1 human|THC2002360 +3 85 0.032 1 g_gallus|TC85927 +2 85 0.039 1 pine|TC28160 +1 61 0.12 2 cotton|TC21293 +2 62 0.38 2 Distribution of Blast Hits on the Query Sequence >human|THC1942790 Length = 933 Score = 440 (159.9 bits), Expect = 1.6e-40, P = 1.6e-40 Identities = 87/87 (100%), Positives = 87/87 (100%), Frame = +2 Query: 1 MALAVRVVYCGA*GYKSKYLQLKKKLEDEFPGRLDICGEGTPQATGFFEVMVAGKLIHSK 60 MALAVRVVYCGA*GYKSKYLQLKKKLEDEFPGRLDICGEGTPQATGFFEVMVAGKLIHSK Sbjct: 215 MALAVRVVYCGA*GYKSKYLQLKKKLEDEFPGRLDICGEGTPQATGFFEVMVAGKLIHSK 394 Query: 61 KKGDGYVDTESKFLKLVAAIKAALAQG 87 KKGDGYVDTESKFLKLVAAIKAALAQG Sbjct: 395 KKGDGYVDTESKFLKLVAAIKAALAQG 475 >potato|TC91192 Length = 744 Score = 440 (159.9 bits), Expect = 2.0e-40, P = 2.0e-40 Identities = 87/87 (100%), Positives = 87/87 (100%), Frame = +2 Query: 1 MALAVRVVYCGA*GYKSKYLQLKKKLEDEFPGRLDICGEGTPQATGFFEVMVAGKLIHSK 60 MALAVRVVYCGA*GYKSKYLQLKKKLEDEFPGRLDICGEGTPQATGFFEVMVAGKLIHSK Sbjct: 68 MALAVRVVYCGA*GYKSKYLQLKKKLEDEFPGRLDICGEGTPQATGFFEVMVAGKLIHSK 247 Query: 61 KKGDGYVDTESKFLKLVAAIKAALAQG 87 KKGDGYVDTESKFLKLVAAIKAALAQG Sbjct: 248 KKGDGYVDTESKFLKLVAAIKAALAQG 328 >pig|TC104447 Length = 719 Score = 418 (152.2 bits), Expect = 4.4e-38, P = 4.4e-38 Identities = 81/87 (93%), Positives = 84/87 (96%), Frame = +1 Query: 1 MALAVRVVYCGA*GYKSKYLQLKKKLEDEFPGRLDICGEGTPQATGFFEVMVAGKLIHSK 60 M +AVRVVYCGA*GYKSKYLQLKKKLEDEFPGRLDICGEGTPQ TGFFEV+VAGKL+HSK Sbjct: 61 MGVAVRVVYCGA*GYKSKYLQLKKKLEDEFPGRLDICGEGTPQVTGFFEVLVAGKLVHSK 240 Query: 61 KKGDGYVDTESKFLKLVAAIKAALAQG 87 K GDGYVDTESKFLKLVAAIKAALAQG Sbjct: 241 KGGDGYVDTESKFLKLVAAIKAALAQG 321 >cattle|TC188469 Length = 750 Score = 399 (145.5 bits), Expect = 4.4e-36, P = 4.4e-36 Identities = 78/86 (90%), Positives = 80/86 (93%), Frame = +2 Query: 1 MALAVRVVYCGA*GYKSKYLQLKKKLEDEFPGRLDICGEGTPQATGFFEVMVAGKLIHSK 60 MA+ VRVVYCGA*GYK KYLQLKKKLEDEFP RLDICGEGTPQ TGFFEV VAGKL+HSK Sbjct: 80 MAVVVRVVYCGA*GYKPKYLQLKKKLEDEFPSRLDICGEGTPQVTGFFEVFVAGKLVHSK 259 Query: 61 KKGDGYVDTESKFLKLVAAIKAALAQ 86 K GDGYVDTESKFLKLVAAIKAALAQ Sbjct: 260 KGGDGYVDTESKFLKLVAAIKAALAQ 337 >mouse|TC1091191 Length = 745 Score = 386 (140.9 bits), Expect = 1.0e-34, P = 1.0e-34 Identities = 76/86 (88%), Positives = 79/86 (91%), Frame = +2 Query: 1 MALAVRVVYCGA*GYKSKYLQLKKKLEDEFPGRLDICGEGTPQATGFFEVMVAGKLIHSK 60 MALAVRVVYCGA*GYK KYLQLK+KLE EFPG LDICGEGTPQ TGFFEV VAGKL+HSK Sbjct: 125 MALAVRVVYCGA*GYKPKYLQLKEKLEHEFPGCLDICGEGTPQVTGFFEVTVAGKLVHSK 304 Query: 61 KKGDGYVDTESKFLKLVAAIKAALAQ 86 K+GDGYVDTESKF KLV AIKAALAQ Sbjct: 305 KRGDGYVDTESKFRKLVTAIKAALAQ 382 >rat|TC437989 Length = 705 Score = 386 (140.9 bits), Expect = 1.1e-34, P = 1.1e-34 Identities = 76/86 (88%), Positives = 79/86 (91%), Frame = +3 Query: 1 MALAVRVVYCGA*GYKSKYLQLKKKLEDEFPGRLDICGEGTPQATGFFEVMVAGKLIHSK 60 MALAVRVVYCGA*GYK KYLQLK+KLE EFPG LDICGEGTPQ TGFFEV VAGKL+HSK Sbjct: 84 MALAVRVVYCGA*GYKPKYLQLKEKLEHEFPGCLDICGEGTPQVTGFFEVTVAGKLVHSK 263 Query: 61 KKGDGYVDTESKFLKLVAAIKAALAQ 86 K+GDGYVDTESKF KLV AIKAALAQ Sbjct: 264 KRGDGYVDTESKFRKLVTAIKAALAQ 341 >zfish|TC208413 Length = 763 Score = 270 (100.1 bits), Expect = 2.0e-22, P = 2.0e-22 Identities = 50/86 (58%), Positives = 65/86 (75%), Frame = +2 Query: 1 MALAVRVVYCGA*GYKSKYLQLKKKLEDEFPGRLDICGEGTPQATGFFEVMVAGKLIHSK 60 M + V VVYCG *GY+ K+++LK LEDEFP L+I GEGTP TG+ EV V GKL+HSK Sbjct: 131 MTVKVHVVYCGG*GYRPKFIKLKTLLEDEFPNELEITGEGTPSTTGWLEVEVNGKLVHSK 310 Query: 61 KKGDGYVDTESKFLKLVAAIKAALAQ 86 K GDG+VD++SK K+V AI+ A+ + Sbjct: 311 KNGDGFVDSDSKMQKIVTAIEQAMGK 388 >xenopus|TC203747 Length = 636 Score = 266 (98.7 bits), Expect = 6.4e-22, P = 6.4e-22 Identities = 49/84 (58%), Positives = 65/84 (77%), Frame = +1 Query: 3 LAVRVVYCGA*GYKSKYLQLKKKLEDEFPGRLDICGEGTPQATGFFEVMVAGKLIHSKKK 62 L + +VYCGA*GY SK+ +LK +L+ FPG+L I GEGT + TG+FEV + GKL+HSKK Sbjct: 145 LEINIVYCGA*GYLSKFRRLKNELDQRFPGKLKINGEGTQRMTGWFEVSINGKLVHSKKN 324 Query: 63 GDGYVDTESKFLKLVAAIKAALAQ 86 GDGYVD ++K K++ AI+AAL Q Sbjct: 325 GDGYVDNDAKLQKIILAIEAALKQ 396 >dog|TC7132 Length = 466 Score = 256 (95.2 bits), Expect = 1.0e-20, P = 1.0e-20 Identities = 49/54 (90%), Positives = 52/54 (96%), Frame = +3 Query: 34 LDICGEGTPQATGFFEVMVAGKLIHSKKKGDGYVDTESKFLKLVAAIKAALAQG 87 LDICGEGTPQATGFFEV VAGKL+HSKK+GDGYVDTESKFL+LVAAIK ALAQG Sbjct: 9 LDICGEGTPQATGFFEVTVAGKLVHSKKRGDGYVDTESKFLRLVAAIKTALAQG 170 >g_gallus|TC80314 Length = 808 Score = 148 (57.2 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19 Identities = 27/45 (60%), Positives = 37/45 (82%), Frame = +1 Query: 40 GTPQATGFFEVMVAGKLIHSKKKGDGYVDTESKFLKLVAAIKAAL 84 GT + TG+FEV V +L+HSKK GDG+VDT++K ++VAAI+AAL Sbjct: 172 GTQEVTGWFEVTVGSRLVHSKKNGDGFVDTDAKLQRIVAAIQAAL 306 Score = 113 (44.8 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19 Identities = 22/39 (56%), Positives = 29/39 (74%), Frame = +2 Query: 1 MALAVRVVYCGA*GYKSKYLQLKKKLEDEFPGRLDICGE 39 M L V V+YCGA*GYK KY +L+ +LE FPG L++ G+ Sbjct: 56 MPLRVTVLYCGA*GYKPKYERLRAELEKRFPGALEMRGQ 172 >s_mansoni|TC16998 Length = 688 Score = 240 (89.5 bits), Expect = 3.4e-19, P = 3.4e-19 Identities = 47/85 (55%), Positives = 64/85 (75%), Frame = +3 Query: 1 MALAVRVVYCGA*GYKSKYLQLKKKLEDEFPGRLDICGEGTPQATGFFEV-MVAGKLIHS 59 M L + V+YCGA*GY+ KY K++LE FPG+L+I GEGTPQ+TG+FEV +V G L+HS Sbjct: 270 MTLKIHVIYCGA*GYEPKYNSFKQQLERRFPGKLEISGEGTPQSTGWFEVQVVGGPLLHS 449 Query: 60 KKKGDGYVDTESKFLKLVAAIKAAL 84 KK GDG+VD+ +K ++ AI+ L Sbjct: 450 KKNGDGFVDS-NKLERICNAIRDLL 521 >xenopus|TC196861 Length = 837 Score = 117 (46.2 bits), Expect = 1.1e-05, P = 1.1e-05 Identities = 29/83 (34%), Positives = 48/83 (57%), Frame = +2 Query: 1 MALAVRVVYCGA*GYKSKYLQLKKKLEDEFPGRLDICGEGTPQATGFFEVMVAGKLIHSK 60 M++++ V YC G++S Y +L +++EFP DI E P TG FE+ + G+L+ SK Sbjct: 35 MSVSIMVEYCEPCGFRSHYEELASAVKEEFP---DITIESRPGGTGAFEIEINGQLVFSK 205 Query: 61 KKGDGYVDTESKFLKLVAAIKAA 83 + G+ + L+AAI+ A Sbjct: 206 LELGGFPYEKD----LIAAIRKA 262 >o_latipes|TC20819 Length = 898 Score = 106 (42.4 bits), Expect = 0.00019, P = 0.00019 Identities = 23/66 (34%), Positives = 38/66 (57%), Frame = +3 Query: 1 MALAVRVVYCGA*GYKSKYLQLKKKLEDEFPGRLDICGEGTPQATGFFEVMVAGKLIHSK 60 M + + V YCG *GY+ +Y L ++DEFP ++ G +G FE+ + G+L+ SK Sbjct: 60 MGVKIDVEYCGR*GYEPRYQDLASTVKDEFP-EAEV--SGFVGRSGSFEIQINGQLVFSK 230 Query: 61 KKGDGY 66 + G+ Sbjct: 231 LELGGF 248 >zfish|TC208879 Length = 1514 Score = 107 (42.7 bits), Expect = 0.00020, P = 0.00020 Identities = 25/66 (37%), Positives = 39/66 (59%), Frame = +3 Query: 1 MALAVRVVYCGA*GYKSKYLQLKKKLEDEFPGRLDICGEGTPQATGFFEVMVAGKLIHSK 60 M + ++V YCG *GY+ +Y +LK+ + EF D+ G Q G FE+ + G+LI SK Sbjct: 93 MGVQIKVEYCGG*GYEPRYQELKRVVTAEFTDA-DVSGFVGRQ--GSFEIEINGQLIFSK 263 Query: 61 KKGDGY 66 + G+ Sbjct: 264 LETSGF 281 >dog|TC6968 Length = 736 Score = 99 (39.9 bits), Expect = 0.00090, P = 0.00090 Identities = 22/64 (34%), Positives = 40/64 (62%), Frame = +3 Query: 5 VRVV--YCGA*GYKSKYLQLKKKLEDEFPGRLDICGEGTPQATGFFEVMVAGKLIHSKKK 62 VR+V YC G+++ YL+L +++++PG ++I E TG FE+ + G+L+ SK + Sbjct: 72 VRIVVEYCEPCGFEATYLELASAVKEQYPG-IEI--ESRLGGTGAFEIEINGQLVFSKLE 242 Query: 63 GDGY 66 G+ Sbjct: 243 NGGF 254 >rat|TC441257 Length = 749 Score = 99 (39.9 bits), Expect = 0.00092, P = 0.00092 Identities = 21/60 (35%), Positives = 37/60 (61%), Frame = +2 Query: 7 VVYCGA*GYKSKYLQLKKKLEDEFPGRLDICGEGTPQATGFFEVMVAGKLIHSKKKGDGY 66 V YC G+++ YL+L +++E+PG ++I E TG FE+ + G+L+ SK + G+ Sbjct: 119 VEYCKPCGFEATYLELASAVKEEYPG-IEI--ESRLGGTGAFEIEINGQLVFSKLENGGF 289 >cattle|TC206992 Length = 774 Score = 99 (39.9 bits), Expect = 0.00095, P = 0.00095 Identities = 22/64 (34%), Positives = 40/64 (62%), Frame = +2 Query: 5 VRVV--YCGA*GYKSKYLQLKKKLEDEFPGRLDICGEGTPQATGFFEVMVAGKLIHSKKK 62 VR+V YC G+++ YL+L +++++PG ++I E TG FE+ + G+L+ SK + Sbjct: 89 VRIVVEYCEPCGFEATYLELASAVKEQYPG-IEI--ESRLGGTGAFEIEINGQLVFSKLE 259 Query: 63 GDGY 66 G+ Sbjct: 260 NGGF 271 >human|THC2002357 Length = 1048 Score = 99 (39.9 bits), Expect = 0.0012, P = 0.0012 Identities = 22/64 (34%), Positives = 40/64 (62%), Frame = +1 Query: 5 VRVV--YCGA*GYKSKYLQLKKKLEDEFPGRLDICGEGTPQATGFFEVMVAGKLIHSKKK 62 VR+V YC G+++ YL+L +++++PG ++I E TG FE+ + G+L+ SK + Sbjct: 394 VRIVVEYCEPCGFEATYLELASAVKEQYPG-IEI--ESRLGGTGAFEIEINGQLVFSKLE 564 Query: 63 GDGY 66 G+ Sbjct: 565 NGGF 576 >pig|TC104785 Length = 1488 Score = 99 (39.9 bits), Expect = 0.0015, P = 0.0015 Identities = 22/64 (34%), Positives = 40/64 (62%), Frame = +3 Query: 5 VRVV--YCGA*GYKSKYLQLKKKLEDEFPGRLDICGEGTPQATGFFEVMVAGKLIHSKKK 62 VR+V YC G+++ YL+L +++++PG ++I E TG FE+ + G+L+ SK + Sbjct: 102 VRIVVEYCEPCGFEATYLELASAVKEQYPG-IEI--ESRLGGTGAFEIEINGQLVFSKLE 272 Query: 63 GDGY 66 G+ Sbjct: 273 NGGF 284 >mouse|TC1102562 Length = 1715 Score = 99 (39.9 bits), Expect = 0.0015, P = 0.0015 Identities = 21/60 (35%), Positives = 37/60 (61%), Frame = +3 Query: 7 VVYCGA*GYKSKYLQLKKKLEDEFPGRLDICGEGTPQATGFFEVMVAGKLIHSKKKGDGY 66 V YC G+++ YL+L +++E+PG ++I E TG FE+ + G+L+ SK + G+ Sbjct: 825 VEYCKPCGFEATYLELASAVKEEYPG-IEI--ESRLGGTGAFEIEINGQLVFSKLENGGF 995 >r_trout|TC36179 Length = 1653 Score = 95 (38.5 bits), Expect = 0.0041, P = 0.0041 Identities = 22/66 (33%), Positives = 38/66 (57%), Frame = +2 Query: 1 MALAVRVVYCGA*GYKSKYLQLKKKLEDEFPGRLDICGEGTPQATGFFEVMVAGKLIHSK 60 M + V+V YCG *GY+ +Y +L + + EF ++ G Q G FE+ + G+++ SK Sbjct: 89 MGVQVKVEYCGG*GYEPRYQELARVVTAEFT-EAEVSGFVGRQ--GSFEIEINGQVVFSK 259 Query: 61 KKGDGY 66 + G+ Sbjct: 260 LETSGF 277 >human|THC2002360 Length = 756 Score = 85 (35.0 bits), Expect = 0.033, P = 0.032 Identities = 17/53 (32%), Positives = 34/53 (64%), Frame = +3 Query: 14 GYKSKYLQLKKKLEDEFPGRLDICGEGTPQATGFFEVMVAGKLIHSKKKGDGY 66 G+++ YL+L +++++PG ++I E TG FE+ + G+L+ SK + G+ Sbjct: 237 GFEATYLELASAVKEQYPG-IEI--ESRLGGTGAFEIEINGQLVFSKLENGGF 386 >g_gallus|TC85927 Length = 977 Score = 85 (35.0 bits), Expect = 0.039, P = 0.039 Identities = 20/62 (32%), Positives = 33/62 (53%), Frame = +2 Query: 5 VRVVYCGA*GYKSKYLQLKKKLEDEFPGRLDICGEGTPQATGFFEVMVAGKLIHSKKKGD 64 + V YC G+ + Y +L + +E+P DI E TG FE+ + G+L+ SK + Sbjct: 122 IMVEYCEPCGFGATYEELASAVREEYP---DIEIESRLGGTGAFEIEINGQLVFSKLENG 292 Query: 65 GY 66 G+ Sbjct: 293 GF 298 >pine|TC28160 Length = 1375 Score = 61 (26.5 bits), Expect = 0.13, Sum P(2) = 0.12 Identities = 12/32 (37%), Positives = 20/32 (62%), Frame = +1 Query: 5 VRVVYCGA*GYKSKYLQLKKKLEDEFPGRLDI 36 V++ +C + Y+ L +KK LE FPG +D+ Sbjct: 262 VQISFCTSCSYRGMALTMKKMLESAFPG-VDV 354 Score = 51 (23.0 bits), Expect = 0.13, Sum P(2) = 0.12 Identities = 11/18 (61%), Positives = 12/18 (66%), Frame = +1 Query: 43 QATGFFEVMVAGKLIHSK 60 Q TG FEVM G L+ SK Sbjct: 574 QGTGAFEVMCNGDLVFSK 627 >cotton|TC21293 Length = 922 Score = 62 (26.9 bits), Expect = 0.48, Sum P(2) = 0.38 Identities = 12/38 (31%), Positives = 22/38 (57%), Frame = +2 Query: 5 VRVVYCGA*GYKSKYLQLKKKLEDEFPGRLDICGEGTP 42 V + +C + Y+ + +KK LE +FPG +D+ + P Sbjct: 284 VNINFCASCSYRGTAVTMKKMLEAQFPG-IDVILDNYP 394 Score = 36 (17.7 bits), Expect = 0.48, Sum P(2) = 0.38 Identities = 12/34 (35%), Positives = 18/34 (52%), Frame = +2 Query: 43 QATGFFEVMVAGKLIHSKKKGDGYVDTESKFLKL 76 Q++G FEV +L SK K +G E++ L Sbjct: 596 QSSGAFEVYCNDELGFSKPK-EGKFPEENELKDL 694 Parameters: matrix=blosum62 E=1.0 B=500 V=500 cpus=1 -o tblastn-ego-26485-1141753800 ctxfactor=6.00 Query ----- As Used ----- ----- Computed ---- Frame MatID Matrix name Lambda K H Lambda K H +0 0 blosum62 0.326 0.142 0.419 same same same Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a Query Frame MatID Length Eff.Length E S W T X E2 S2 +0 0 87 87 0.86 74 3 13 22 0.14 32 29 0.12 35 Statistics: Database: /usr/local/db/TGI/ego Title: ego Posted: 4:28:17 AM EDT Apr 21, 2004 Created: 3:39:33 PM EDT Apr 21, 2004 Format: XDF-1 # of letters in database: 518,504,102 # of sequences in database: 362,065 # of database sequences satisfying E: 25 No. of states in DFA: 264 (28 KB) Total size of DFA: 39 KB (2054 KB) Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00 No. of threads or processors used: 1 Search cpu time: 14.98u 0.07s 15.05t Elapsed: 00:00:15 Total cpu time: 14.98u 0.08s 15.06t Elapsed: 00:00:15 Start: Tue Mar 7 12:50:00 2006 End: Tue Mar 7 12:50:15 2006