matrix position core matrix sequence (always the factor name identifier (strand) match match (+)-strand is shown) V$PAX6_01 8 (+) 1.000 0.810 atgttTCACGctggaggtgaa Pax-6 V$PAX4_01 20 (-) 0.902 0.833 ggaggtgaacaCATCActcct Pax-4 V$HOX13_01 203 (-) 1.000 0.933 ttagtgaaaacacTAATGatgaaaatggca Hox-1.3 V$ARP1_01 306 (-) 0.924 0.922 tgaggtCAGGGgttca ARP-1 V$PAX4_01 306 (+) 0.979 0.885 tgaggTCAGGggttcaagacc Pax-4 V$PAX4_01 428 (-) 0.986 0.836 caggagaatcgCTTGAactca Pax-4 V$PAX4_01 472 (-) 0.979 0.883 gagatcacaccCCTGAactcc Pax-4 V$NKX25_01 759 (+) 1.000 1.000 tcAAGTG Nkx2-5 V$EVI1_04 820 (+) 0.842 0.856 tgataaaagAAAATa Evi-1 V$NKX25_01 899 (-) 1.000 1.000 CACTTga Nkx2-5 V$FOXD3_01 1137 (-) 1.000 0.956 aaataAACAAaa FOXD3 V$AP1_Q4 1167 (+) 1.000 0.997 ggTGACTcaga AP-1 V$AP1_Q2 1167 (+) 1.000 1.000 ggTGACTcaga AP-1 V$PADS_C 1317 (+) 1.000 1.000 tGTGGTctc Poly A downstream element V$CDPCR1_01 1460 (+) 0.929 0.929 cATTGAtggc CDP CR1