GENSCAN 1.0 Date run: 10-Mar-106 Time: 18:45:54 Sequence apo2 : 275000 bp : 40.02% C+G : Isochore 1 ( 0 - 43 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.01 Term + 2520 2729 210 2 0 127 40 130 0.977 8.41 1.02 PlyA + 3161 3166 6 1.05 2.08 PlyA - 3594 3589 6 -0.45 2.07 Term - 7865 7791 75 2 0 90 48 60 0.308 -0.94 2.06 Intr - 8392 8212 181 0 1 105 48 195 0.550 16.15 2.05 Intr - 8754 8699 56 0 2 67 53 13 0.331 -7.44 2.04 Intr - 10221 9619 603 0 0 -32 42 912 0.825 66.35 2.03 Intr - 10492 10465 28 0 1 106 -10 36 0.330 -7.20 2.02 Intr - 11396 11270 127 0 1 76 71 124 0.969 8.32 2.01 Init - 11802 11754 49 0 1 46 117 188 0.994 16.67 2.00 Prom - 11954 11915 40 -5.25 3.00 Prom + 13850 13889 40 -13.40 3.01 Sngl + 15864 16556 693 2 0 77 46 286 0.598 19.25 3.02 PlyA + 16717 16722 6 -3.64 4.00 Prom + 18485 18524 40 -5.25 4.01 Init + 19194 19248 55 2 1 83 79 139 0.764 12.00 4.02 Intr + 19384 19507 124 2 1 83 86 107 0.767 8.72 4.03 Term + 21375 21495 121 0 1 52 53 152 0.948 5.07 4.04 PlyA + 21656 21661 6 1.05 5.34 PlyA - 24384 24379 6 1.05 5.33 Term - 25022 24419 604 1 1 92 54 952 0.341 85.20 5.32 Intr - 25768 25612 157 2 1 100 78 191 0.999 17.45 5.31 Intr - 26018 25956 63 0 0 122 77 62 0.462 6.27 5.30 Intr - 36219 35985 235 0 1 108 65 253 0.872 21.34 5.29 Intr - 37894 37731 164 2 2 115 39 94 0.992 5.97 5.28 Intr - 46712 46421 292 2 1 21 107 177 0.525 8.68 5.27 Intr - 47412 47040 373 2 1 59 80 249 0.562 15.34 5.26 Intr - 48215 47876 340 0 1 100 110 293 0.987 26.31 5.25 Intr - 49994 49885 110 1 2 77 113 44 0.964 4.81 5.24 Intr - 50938 50709 230 1 2 80 58 179 0.568 9.84 5.23 Intr - 52429 52279 151 0 1 75 95 163 0.939 14.94 5.22 Intr - 56700 56557 144 2 0 112 109 185 0.994 21.48 5.21 Intr - 59012 58942 71 2 2 113 80 134 0.999 12.16 5.20 Intr - 62247 62092 156 0 0 90 81 169 0.991 15.69 5.19 Intr - 62667 62514 154 2 1 84 77 129 0.999 10.55 5.18 Intr - 63878 63769 110 2 2 96 113 160 0.999 17.46 5.17 Intr - 64062 63898 165 0 0 72 -8 130 0.621 1.04 5.16 Intr - 64620 64477 144 0 0 71 80 102 0.992 7.26 5.15 Intr - 64974 64864 111 0 0 98 70 147 0.949 13.56 5.14 Intr - 65684 65535 150 2 0 77 84 140 0.806 11.94 5.13 Intr - 71700 71678 23 1 2 87 87 40 0.683 0.14 5.12 Intr - 84987 84864 124 0 1 47 110 84 0.983 5.74 5.11 Intr - 85928 85804 125 0 2 79 106 140 0.876 14.28 5.10 Intr - 115991 115830 162 0 0 101 94 187 0.840 19.63 5.09 Intr - 119020 118908 113 0 2 54 49 73 0.811 -0.90 5.08 Intr - 119835 119685 151 1 1 46 50 138 0.838 4.10 5.07 Intr - 142718 142655 64 2 1 76 111 56 0.873 4.07 5.06 Intr - 145675 145559 117 1 0 86 91 103 0.997 10.14 5.05 Intr - 149941 149912 30 1 0 100 97 18 0.118 1.31 5.04 Intr - 190512 190449 64 2 1 111 97 26 0.131 3.60 5.03 Intr - 193424 193337 88 0 1 79 75 38 0.024 -0.29 5.02 Intr - 215426 215321 106 2 1 29 69 88 0.070 -0.13 5.01 Init - 224662 224507 156 1 0 83 20 127 0.122 5.36 5.00 Prom - 236784 236745 40 -3.85 Predicted peptide sequence(s): Predicted coding sequence(s): >apo2|GENSCAN_predicted_peptide_1|69_aa DIPQPPPGSTGHTMITAGGHGVPMQELLLILPGQSLKSSKALYVQEESGPQITSLCPNQG HVVHQRPQG >apo2|GENSCAN_predicted_CDS_1|210_bp gacatacctcagcctcctcctgggagcacagggcatactatgataacagcaggaggacac ggcgtccccatgcaggagctgcttttgatcctgccaggacaatccctcaagagcagcaag gccctgtatgtacaggaagagagtggccctcagatcacttccctttgccctaatcagggc cacgtagtacaccagagacctcaggggtag >apo2|GENSCAN_predicted_peptide_2|372_aa MFLKAVVLTLALVAVAGARAEVSADQVATVMWDYFSQLSNNAKEAVEHLQKSELTQQLNA LFQDKLGEAEQLRRQLTPYAQRMERVLRENADSLQASLRPHADELKAKIDQNVEELKGRL TPYADEFKVKIDQTVEELRRSLAPYAQDTQEKLNHQLEGLTFQMKKNAEELKARISASAE ELRQRLAPLAEDVRGNLRGNTEGLQKSLAELGGHLDQQVEEFRRRVEPYGENFNKALVQQ MEQLRQKLGPHAGDVEGHLSFLEKDLRDKNWGLRLGDRDESGEEGQSRGMQALQGFPGRG LEHAKEEGEVPLEGVLGPPPSLSRCPQGSGPQHGLAQAYTPLAPGAGLASKAAAATLIPT PTRSTGTYGETP >apo2|GENSCAN_predicted_CDS_2|1119_bp atgttcctgaaggccgtggtcctgaccctggccctggtggctgtcgccggagccagggct gaggtcagtgctgaccaggtggccacggtgatgtgggactacttcagccagctgagcaac aatgccaaggaggccgtggaacatctccagaaatctgaactcacccagcaactcaatgcc ctcttccaggacaaacttggagaagccgagcagctgcggcgccagctgaccccctacgca cagcgcatggagagagtgctgcgggagaacgccgacagcctgcaggcctcgctgaggccc cacgccgacgagctcaaggccaagatcgaccagaacgtggaggagctcaagggacgcctt acgccctacgctgacgaattcaaagtcaagattgaccagaccgtggaggagctgcgccgc agcctggctccctatgctcaggacacgcaggagaagctcaaccaccagcttgagggcctg accttccagatgaagaagaacgccgaggagctcaaggccaggatctcggccagtgccgag gagctgcggcagaggctggcgcccttggccgaggacgtgcgtggcaacctgaggggcaac accgaggggctgcagaagtcactggcagagctgggtgggcacctggaccagcaggtggag gagttccgacgccgggtggagccctacggggaaaacttcaacaaagccctggtgcagcag atggaacagctcaggcagaaactgggcccccatgcgggggacgtggaaggccacttgagc ttcctggagaaggacctgagggacaagaattggggattgaggcttggggaccgagacgag tctggggaggaggggcagagcagggggatgcaggcccttcagggctttcctggaagaggc ctggaacatgctaaggaggagggggaagtccccttggagggtgtcctggggcctcctcct tccctctcaaggtgccctcagggtagtggcccccagcatggtctggcccaggcctatacc cctctggcccctggtgctggcctggccagtaaggctgctgcggccactttgatacctacc cccactagaagcacaggaacctatggggaaacaccttga >apo2|GENSCAN_predicted_peptide_3|230_aa MGAHVLNLTWTQGETAQPQRTIFGPGWSNPLFLPSTTGFSLEQSSSQGSHDGREGQRRLA TKRSPAGVQVGLLVRGHRYSQVPSPWKETRYQASWRCATSSSAPCQVSLPTCPDLPGSVA MREREARLLQTLCRDGKAWRVWGHGTPPAHSSTPGPIDLVACPCLDLGPHCAFASGAMEQ AAAEEERASPIPNPPVTTSSPSTPPPKSAGDLRQVCSGRVTDASIGVSVL >apo2|GENSCAN_predicted_CDS_3|693_bp atgggggctcatgtactaaacctcacctggacacaaggtgaaacagcccaaccccagagg accatttttggccccggatggtcaaatcccctcttcctcccatctaccactggcttctcc ctggagcagtcttcatcccaggggagccatgatgggagagaggggcagcgcaggctggcc accaagagatcccctgccggggtgcaggttggactgttggtgaggggccacaggtattct caggtaccaagcccttggaaggagacaaggtaccaggcttcctggaggtgtgctacatct agctcagcaccctgccaggtctctctacccacatgtcctgacctccctgggtccgttgcc atgcgggagagagaggccaggctcctccagaccctctgcagagatggaaaggcttggagg gtctggggccacgggaccccgccagcccattctagcacacccgggcccatagaccttgtt gcctgcccctgcctggatctgggtccccactgtgcctttgcctctggggctatggagcag gccgcagcagaagaggaaagggcatccccaataccaaatcctccagtgaccacttcttca ccttctaccccaccaccaaagtctgcaggagacttgagacaggtttgttctgggcgtgtg actgatgcctctataggggtctcagtgctctaa >apo2|GENSCAN_predicted_peptide_4|99_aa MQPRVLLVVALLALLASARASEAEDASLLSFMQGYMKHATKTAKDALSSVQESQVAQQAR GWVTDGFSSLKDYWSTVKDKFSEFWDLDPEVRPTSAVAA >apo2|GENSCAN_predicted_CDS_4|300_bp atgcagccccgggtactccttgttgttgccctcctggcgctcctggcctctgcccgagct tcagaggccgaggatgcctcccttctcagcttcatgcagggttacatgaagcacgccacc aagaccgccaaggatgcactgagcagcgtgcaggagtcccaggtggcccagcaggccagg ggctgggtgaccgatggcttcagttccctgaaagactactggagcaccgttaaggacaag ttctctgagttctgggatttggaccctgaggtcagaccaacttcagccgtggctgcctga >apo2|GENSCAN_predicted_peptide_5|1748_aa MPLAKGLLHPSPEKEKRKHKKKRLVQSPNSCFMDVKCPGCYKIITVFSHAQTIDERDSLA AGELVDTRALNCQHQPSLHCPRKACGRAGIGLELAKGGMRRRGRNLTRVGWSKVIDRWTD RIKFAFVNSCDNVEGGLKKTPTFQFAAKVAIKIIDKTQLDEENLKKIFREVQIMKMLCHP HIIRLYQVMETERMIYLVTEYASGGEIFENSKSISCTSNNITLRRVCKSLSVTYFFSFCK EGQTKKIKEDQCQVMVMGKAYTNIKQLFVSRQLKGDFQQGVKTTAGCWLPGTPTRPHHLV AHGRMAEKEARRKFKQIVTAVYFCHCRNIVHRDLKAENLLLDANLNIKIADFGFSNLFTP GQLLKTWCGSPPYAAPELFEGKEYDGPKVDIWSLGVVLYVLVCGALPFDGSTLQNLRARV LSGKFRIPFFMSTGLVPELDKRLKAGCLSIAECEHLIRHMLVLDPNKRLSMEQICKHKWM KLGDADPNFDRLIAECQQLKEERQVDPLNEDVLLAMEDMGLDKEQTLQSLRSDAYDHYSA IYSLLCDRHKRHKTLRLGALPSMPRALAFQAPVNIQAEQAGTAMNISVPQVQLINPENQI VEASSNLWELSAETTFFAISLLPFLLISNSMPDGTLNLDSDEGEEPSPEALVRYLSMRRH TVGVADPRTEVMEDLQKLLPGFPGVNPQAPFLQVAPNVNFMHNLLPMQNLQPTGQLEYKE QSLLQPPTLQLLNGMGPLGRRASDGGANIQLHAQQLLKRPRGPSPLVTMTPAVPAVTPVD EESSDGEPDQEAVQRYLANRSKRHTLAMTNPTAEIPPDLQRQLGQQPFRSRVWPPHLVPD QHRSTYKDSNTLHLPTERFSPVRRFSDGAASIQAFKAHLEKMGNNSSIKQLQQECEQLQK MYGGQIDERTLEKTQQQHMLYQQEQHHQILQQQIQVGPHSLLSPTCLEFAFRLICLCILE ETTQCKVDLRLRIQPSSPPPNHPNNHLFRQPSNSPPPMSSAMIQPHGAASSSQFQGLPSR SAIFQQQPENCSSPPNVALTCLGMQQPAQSQQVTIQVQEPVDMLSNMPGTAAGSSGRGIS ISPSAGQMQMQHRTNLMATLSYGHRPLSKQLSADSAEAHSSLYQWVLPTEEEELFPGSLV LVTWMSGTPFCVCSLNVNRFSPANYDQAHLHPHLFSDQSRGSPSSYSPSTGVGFSPTQAL KVPPLDQFPTFPPSAHQQPPHYTTSALQQALLSPTPPDYTRHQQASSPTPPHGYAHQPAL MHSESMEEDCSCEGAKDGFQDSKSSSTLTKGCHDSPLLLSTGGPGDPESLLGTVSHAQEL GIHPYGHQPTAAFSKNKVPSREPVIGNCMDRSSPGQAVELPDHNGLGYPARPSVHEHHRP RALQRHHTIQNSDDAYVQLDNLPGMSLVAGKALSSARMSDAVLSQSSLMGSQQFQDGENE GEEPYAWGTPEKFLEGPPSIFRNCSSLRRKSSWGGPPRPFRMKAAVLTLAVLFLTGSQAR HFWQQDEPPQSPWDRVKDLATVYVDVLKDSGRDYVSQFEGSALGKQLNLKLLDNWDSVTS TFSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELY RQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAPYSDELRQRLA ARLEALKENGGARLAEYHAKATEHLSTLSEKAKPALEDLRQGLLPVLESFKVSFLSALEE YTKKLNTQ >apo2|GENSCAN_predicted_CDS_5|5247_bp atgcctcttgcaaagggtctccttcatccctctccagaaaaggagaagaggaaacacaag aagaaacgcctggtgcagagccccaattcctgcttcatggatgtgaaatgcccaggatgc tataaaatcatcacggtctttagccatgcacaaacgattgatgaaagggacagcttagca gctggagagctggtagacactagagcactaaattgccagcaccagccttctcttcattgt ccacgtaaggcttgtggcagagcaggaattggactagagttggccaaaggtgggatgagg agaagaggtaggaatcttacaagagttggttggagtaaagttattgacaggtggacagat agaatcaagtttgcttttgttaattcatgtgacaatgtagaaggtggactgaagaaaact cccactttccagtttgcagctaaggttgctatcaagatcatagataagacccagctggat gaagaaaacttgaagaagattttccgggaagttcaaattatgaagatgctttgccacccc catatcatcaggctctaccaggttatggagacagaacggatgatttatctggtgacagaa tatgctagtggaggggaaatatttgaaaattcaaaatcgatttcctgtacttctaacaat attactcttcgtcgggtatgtaaatctcttagtgtcacttacttcttttcattttgcaag gaagggcagaccaaaaagattaaagaagaccaatgccaagtcatggtcatgggaaaagca tatacgaatataaagcagctatttgtcagcaggcagctgaaaggcgattttcagcaggga gtgaaaaccactgcaggctgctggcttcctggcacacccactagacctcaccacctggtg gcccatggtagaatggcagaaaaggaggcacgtcggaagttcaaacagatcgtcacagct gtctatttttgtcactgtcggaacattgttcatcgtgatttaaaagctgaaaatttactt ctggatgccaatctgaatatcaaaatagcagattttggtttcagtaacctcttcactcct gggcagctgctgaagacctggtgtggcagccctccctatgctgcacctgaactctttgaa ggaaaagaatatgatgggcccaaagtggacatctggagccttggagttgtcctctacgtg cttgtgtgcggtgccctgccatttgatggaagcacactgcagaatctgcgggcccgcgtg ctgagtggaaagttccgcatcccattttttatgtccacagggctggtacccgagctggac aaaagactgaaggcaggctgtttgtccattgcagaatgtgagcatttgatccgccatatg ttggtgttagatcccaataagcgcctctccatggagcagatctgcaagcacaagtggatg aagctaggggacgccgatcccaactttgacaggttaatagctgaatgccaacaactaaag gaagaaagacaggtggaccccctgaatgaggatgtcctcttggccatggaggacatggga ctggacaaagaacagacactgcagtcattaagatcagatgcctatgatcactatagtgca atctacagcctgctgtgtgatcgacataagagacataaaaccctgcgtctcggagcactt cctagcatgccccgagccctggcctttcaagcaccagtcaatatccaggcggagcaggca ggtactgctatgaacatcagcgttccccaggtgcagctgatcaacccagagaaccaaatt gtggaggcaagtagcaacctgtgggagctgtcagctgaaaccactttctttgccatatcc ttgcttcccttccttctgatttctaactcgatgccggatgggacactgaatttggacagt gatgagggtgaagagccttcccctgaagcattggtgcgctatttgtcaatgaggaggcac acagtgggtgtggctgacccacgcacggaagttatggaagatctgcagaagctcctacct ggctttcctggagtcaacccccaggctccattcctgcaggtggcccctaatgtgaacttc atgcacaacctgttgcctatgcaaaacttgcaaccaaccgggcaacttgagtacaaggag cagtctctcctacagccgcccacgctacagctgttgaatggaatgggcccccttggccgg agggcatcagatggaggagccaacatccaactgcatgcccagcagctgctgaagcgccca cggggaccctctccgcttgtcaccatgacaccagcagtgccagcagttacccctgtggac gaggagagctcagacggggagccagaccaggaagctgtgcagaggtacttggcaaatagg tccaaaagacatacactggccatgaccaaccctacagctgagatcccaccggacctacaa cggcagctaggacagcagcctttccgttcccgggtctggcctcctcacctggtacctgat cagcatcgctctacctacaaggactccaacactctgcacctccctacggagcgtttctcc cctgtgcgccggttctcagatggggctgcgagcatccaggccttcaaagctcacctggaa aaaatgggcaacaacagcagcatcaaacagctgcagcaggagtgtgagcagctgcagaag atgtacggggggcagattgatgaaagaaccctggagaagacccagcagcagcatatgtta taccagcaggagcagcaccatcaaattctccagcaacaaattcaagtaggccctcactct ttgctttctccaacttgtttggagtttgctttcaggctgatttgcctgtgcattttggag gagaccactcagtgcaaagtggatttgaggttaaggattcagccttcaagcccacccccc aaccaccccaacaaccatctcttcaggcagcccagtaatagtcctccccccatgagcagt gccatgatccagcctcacggggctgcatcttcttcccagtttcaaggcttaccttcccgc agtgcaatctttcagcagcaacctgagaactgttcctctcctcccaacgtggcactaacc tgcttgggtatgcagcagcctgctcagtcacagcaggtcaccatccaagtccaagagcct gttgacatgctcagcaacatgccaggcacagctgcaggctccagtgggcgcggcatctcc atcagccccagtgctggtcagatgcagatgcagcaccgtaccaacctgatggccaccctc agctatgggcaccgtcccttgtccaagcagctgagtgctgacagtgcagaggctcacagt tctctgtaccagtgggttctccctactgaggaggaggagctgttcccaggaagtctagta cttgttacatggatgtctggtactcccttttgtgtctgcagcttgaacgtgaatcggttc tcccctgctaactacgaccaggcgcatttacacccccatctgttttcggaccagtcccgg ggttcccccagcagctacagcccttcaacaggagtggggttctctccaacccaagccctg aaagtccctccacttgaccaattccccaccttccctcccagtgcacatcagcagccgcca cactataccacgtcggcactacagcaggccctgctgtctcccacgccgccagactataca agacaccagcaggcttcctcacccaccccgccccacgggtatgctcaccagccggcactg atgcattcagagagcatggaggaggactgctcgtgtgagggggccaaggatggcttccaa gacagtaagagttcaagtacattgaccaaaggttgccatgacagccctctgctcttgagt accggtggacctggggaccctgaatctttgctaggaactgtgagtcatgcccaagaattg gggatacatccctatggtcatcagccaactgctgcattcagtaaaaataaggtgcccagc agagagcctgtcatagggaactgcatggatagaagttctccaggacaagcagtggagctg ccggatcacaatgggctcgggtacccagcacgcccctccgtccatgagcaccacaggccc cgggccctccagagacaccacacgatccagaacagcgacgatgcttatgtacagctggat aacttgccaggaatgagtctcgtggctgggaaagcacttagctctgcccggatgtcggat gcagttctcagtcagtcttcgctcatgggcagccagcagtttcaggatggggaaaatgag ggtgaggagccttatgcatggggcactccagagaagttcctggaggggcctccctccatc ttccgtaactgctcctctcttcgtaggaagagctcatggggaggtcccccacggcccttc aggatgaaagctgcggtgctgaccttggccgtgctcttcctgacggggagccaggctcgg catttctggcagcaagatgaacccccccagagcccctgggatcgagtgaaggacctggcc actgtgtacgtggatgtgctcaaagacagcggcagagactatgtgtcccagtttgaaggc tccgccttgggaaaacagctaaacctaaagctccttgacaactgggacagcgtgacctcc accttcagcaagctgcgcgaacagctcggccctgtgacccaggagttctgggataacctg gaaaaggagacagagggcctgaggcaggagatgagcaaggatctggaggaggtgaaggcc aaggtgcagccctacctggacgacttccagaagaagtggcaggaggagatggagctctac cgccagaaggtggagccgctgcgcgcagagctccaagagggcgcgcgccagaagctgcac gagctgcaagagaagctgagcccactgggcgaggagatgcgcgaccgcgcgcgcgcccat gtggacgcgctgcgcacgcatctggccccctacagcgacgagctgcgccagcgcttggcc gcgcgccttgaggctctcaaggagaacggcggcgccagactggccgagtaccacgccaag gccaccgagcatctgagcacgctcagcgagaaggccaagcccgcgctcgaggacctccgc caaggcctgctgcccgtgctggagagcttcaaggtcagcttcctgagcgctctcgaggag tacactaagaagctcaacacccagtga