## date Thu Mar 9 20:34:57 2006 ## source-version: geneid v 1.2 -- geneid@imim.es # Sequence apo2 - Length = 275006 bps # Optimal Gene Structure. 4 genes. Score = 111.08 # Gene 1 (Reverse). 1 exons. 187 aa. Score = 27.61 First 9619 10179 27.61 - 0 0 -0.40 2.35 78.60 0.00 AA 1:187 apo2_1 >apo2_1|geneid_v1.2_predicted_cDNA_1|561_NN ATGGAGAGAGTGCTGCGGGAGAACGCCGACAGCCTGCAGGCCTCGCTGAGGCCCCACGCC GACGAGCTCAAGGCCAAGATCGACCAGAACGTGGAGGAGCTCAAGGGACGCCTTACGCCC TACGCTGACGAATTCAAAGTCAAGATTGACCAGACCGTGGAGGAGCTGCGCCGCAGCCTG GCTCCCTATGCTCAGGACACGCAGGAGAAGCTCAACCACCAGCTTGAGGGCCTGACCTTC CAGATGAAGAAGAACGCCGAGGAGCTCAAGGCCAGGATCTCGGCCAGTGCCGAGGAGCTG CGGCAGAGGCTGGCGCCCTTGGCCGAGGACGTGCGTGGCAACCTGAGGGGCAACACCGAG GGGCTGCAGAAGTCACTGGCAGAGCTGGGTGGGCACCTGGACCAGCAGGTGGAGGAGTTC CGACGCCGGGTGGAGCCCTACGGGGAAAACTTCAACAAAGCCCTGGTGCAGCAGATGGAA CAGCTCAGGCAGAAACTGGGCCCCCATGCGGGGGACGTGGAAGGCCACTTGAGCTTCCTG GAGAAGGACCTGAGGGACAAG >apo2_1|geneid_v1.2_predicted_protein_1|187_AA MERVLRENADSLQASLRPHADELKAKIDQNVEELKGRLTPYADEFKVKIDQTVEELRRSL APYAQDTQEKLNHQLEGLTFQMKKNAEELKARISASAEELRQRLAPLAEDVRGNLRGNTE GLQKSLAELGGHLDQQVEEFRRRVEPYGENFNKALVQQMEQLRQKLGPHAGDVEGHLSFL EKDLRDK # Gene 2 (Reverse). 2 exons. 60 aa. Score = 2.63 Terminal 11266 11396 1.49 - 2 0 0.00 2.39 12.65 0.00 AA 17: 60 apo2_2 First 11754 11802 1.14 - 0 1 3.86 1.81 6.84 0.00 AA 1: 17 apo2_2 >apo2_2|geneid_v1.2_predicted_cDNA_2|180_NN ATGTTCCTGAAGGCCGTGGTCCTGACCCTGGCCCTGGTGGCTGTCGCCGGAGCCAGGGCT GAGGTCAGTGCTGACCAGGTGGCCACGGTGATGTGGGACTACTTCAGCCAGCTGAGCAAC AATGCCAAGGAGGCCGTGGAACATCTCCAGAAATCTGAACTCACCCAGCAACTCAAGTAA >apo2_2|geneid_v1.2_predicted_protein_2|60_AA MFLKAVVLTLALVAVAGARAEVSADQVATVMWDYFSQLSNNAKEAVEHLQKSELTQQLK* # Gene 3 (Forward). 2 exons. 69 aa. Score = 0.23 First 19422 19507 0.89 + 0 2 1.01 0.84 11.95 0.00 AA 1: 29 apo2_3 Terminal 21375 21495 -0.66 + 1 0 2.07 0.00 7.75 0.00 AA 29: 69 apo2_3 >apo2_3|geneid_v1.2_predicted_cDNA_3|207_NN ATGCAGGGTTACATGAAGCACGCCACCAAGACCGCCAAGGATGCACTGAGCAGCGTGCAG GAGTCCCAGGTGGCCCAGCAGGCCAGGGGCTGGGTGACCGATGGCTTCAGTTCCCTGAAA GACTACTGGAGCACCGTTAAGGACAAGTTCTCTGAGTTCTGGGATTTGGACCCTGAGGTC AGACCAACTTCAGCCGTGGCTGCCTGA >apo2_3|geneid_v1.2_predicted_protein_3|69_AA MQGYMKHATKTAKDALSSVQESQVAQQARGWVTDGFSSLKDYWSTVKDKFSEFWDLDPEV RPTSAVAA* # Gene 4 (Reverse). 27 exons. 1392 aa. Score = 80.60 Terminal 24419 25022 28.50 - 1 0 0.00 3.28 78.82 0.00 AA 1191:1392 apo2_4 Internal 25612 25768 3.35 - 2 2 3.21 3.44 10.90 0.00 AA 1139:1191 apo2_4 Internal 25956 26018 0.99 - 2 1 3.07 4.14 4.17 0.00 AA 1118:1139 apo2_4 Internal 36087 36219 3.59 - 0 1 2.97 5.59 8.63 0.00 AA 1074:1118 apo2_4 Internal 37731 37894 0.59 - 2 0 0.02 4.41 7.32 0.00 AA 1019:1073 apo2_4 Internal 46421 46673 0.28 - 0 1 5.50 -0.90 6.31 0.00 AA 935:1019 apo2_4 Internal 47040 47310 2.28 - 1 0 0.58 4.24 10.98 0.00 AA 844:934 apo2_4 Internal 47876 48215 7.98 - 2 2 5.38 4.12 18.20 0.00 AA 731:844 apo2_4 Internal 49885 49994 -0.32 - 1 1 3.67 4.80 0.24 0.00 AA 694:731 apo2_4 Internal 50452 50537 0.44 - 0 2 2.45 4.50 4.43 0.00 AA 666:694 apo2_4 Internal 50813 50938 2.05 - 0 0 1.51 4.41 9.98 0.00 AA 624:665 apo2_4 Internal 52279 52429 3.99 - 1 0 2.87 2.86 13.88 0.00 AA 573:623 apo2_4 Internal 56557 56700 3.39 - 1 2 2.52 4.75 11.34 0.00 AA 525:573 apo2_4 Internal 58942 59012 1.99 - 0 2 2.08 6.52 5.83 0.00 AA 502:525 apo2_4 Internal 62092 62247 2.25 - 0 0 1.59 4.82 8.52 0.00 AA 450:501 apo2_4 Internal 62514 62667 1.60 - 1 0 1.24 2.44 10.98 0.00 AA 398:449 apo2_4 Internal 63769 63878 1.56 - 0 2 3.67 2.81 7.93 0.00 AA 362:398 apo2_4 Internal 64477 64620 1.57 - 0 0 2.83 4.59 5.30 0.00 AA 314:361 apo2_4 Internal 64864 64974 1.44 - 0 0 1.41 4.04 7.93 0.00 AA 277:313 apo2_4 Internal 65535 65684 1.93 - 0 0 2.75 2.30 11.00 0.00 AA 227:276 apo2_4 Internal 84419 84474 -0.98 - 2 0 1.33 5.76 0.66 0.00 AA 208:226 apo2_4 Internal 84864 84987 2.25 - 0 1 5.66 1.32 8.90 0.00 AA 167:208 apo2_4 Internal 85804 85928 2.17 - 2 0 3.39 4.27 7.68 0.00 AA 125:166 apo2_4 Internal 115830 115991 3.87 - 2 1 4.44 3.79 11.08 0.00 AA 71:125 apo2_4 Internal 142655 142718 0.33 - 0 1 3.66 2.92 4.72 0.00 AA 50: 71 apo2_4 Internal 145559 145675 3.42 - 0 0 3.72 5.34 8.69 0.00 AA 11: 49 apo2_4 Internal 149912 149941 0.09 - 0 0 3.54 5.10 1.00 0.00 AA 1: 10 apo2_4 >apo2_4|geneid_v1.2_predicted_cDNA_4|4176_NN AAAACTCCCACTTTCCAGTTTGCAGCTAAGGTTGCTATCAAGATCATAGATAAGACCCAG CTGGATGAAGAAAACTTGAAGAAGATTTTCCGGGAAGTTCAAATTATGAAGATGCTTTGC CACCCCCATATCATCAGGCTCTACCAGGTTATGGAGACAGAACGGATGATTTATCTGGTG ACAGAATATGCTAGTGGAGGGGAAATATTTGACCACCTGGTGGCCCATGGTAGAATGGCA GAAAAGGAGGCACGTCGGAAGTTCAAACAGATCGTCACAGCTGTCTATTTTTGTCACTGT CGGAACATTGTTCATCGTGATTTAAAAGCTGAAAATTTACTTCTGGATGCCAATCTGAAT ATCAAAATAGCAGATTTTGGTTTCAGTAACCTCTTCACTCCTGGGCAGCTGCTGAAGACC TGGTGTGGCAGCCCTCCCTATGCTGCACCTGAACTCTTTGAAGGAAAAGAATATGATGGG CCCAAAGTGGACATCTGGAGCCTTGGAGTTGTCCTCTACGTGCTTGTGTGCGGTGCCCTG CCATTTGATGGAAGCACACTGCAGAATCTGCGGGCCCGCGTGCTGAGTGGAAAGTTCCGC ATCCCATTTTTTATGTCCACAGGATATTTCCACTTATTGGGTTCTCATTGCAATGTGGTT TTAAATGCCAAGGATAAAAGACTGAAGGCAGGCTGTTTGTCCATTGCAGAATGTGAGCAT TTGATCCGCCATATGTTGGTGTTAGATCCCAATAAGCGCCTCTCCATGGAGCAGATCTGC AAGCACAAGTGGATGAAGCTAGGGGACGCCGATCCCAACTTTGACAGGTTAATAGCTGAA TGCCAACAACTAAAGGAAGAAAGACAGGTGGACCCCCTGAATGAGGATGTCCTCTTGGCC ATGGAGGACATGGGACTGGACAAAGAACAGACACTGCAGTCATTAAGATCAGATGCCTAT GATCACTATAGTGCAATCTACAGCCTGCTGTGTGATCGACATAAGAGACATAAAACCCTG CGTCTCGGAGCACTTCCTAGCATGCCCCGAGCCCTGGCCTTTCAAGCACCAGTCAATATC CAGCCGGATGGGACACTGAATTTGGACAGTGATGAGGGTGAAGAGCCTTCCCCTGAAGCA TTGGTGCGCTATTTGTCAATGAGGAGGCACACAGTGGGTGTGGCTGACCCACGCACGGAA GTTATGGAAGATCTGCAGAAGCTCCTACCTGGCTTTCCTGGAGTCAACCCCCAGGCTCCA TTCCTGCAGGTGGCCCCTAATGTGAACTTCATGCACAACCTGTTGCCTATGCAAAACTTG CAACCAACCGGGCAACTTGAGTACAAGGAGCAGTCTCTCCTACAGCCGCCCACGCTACAG CTGTTGAATGGAATGGGCCCCCTTGGCCGGAGGGCATCAGATGGAGGAGCCAACATCCAA CTGCATGCCCAGCAGCTGCTGAAGCGCCCACGGGGACCCTCTCCGCTTGTCACCATGACA CCAGCAGTGCCAGCAGTTACCCCTGTGGACGAGGAGAGCTCAGACGGGGAGCCAGACCAG GAAGCTGTGCAGAGGTACTTGGCAAATAGGTCCAAAAGACATACACTGGCCATGACCAAC CCTACAGCTGAGATCCCACCGGACCTACAACGGCAGCTAGGACAGCAGCCTTTCCGTTCC CGGGTCTGGCCTCCTCACCTGGTACCTGATCAGCATCGCTCTACCTACAAGGACTCCAAC ACTCTGCACCTCCCTACGGAGCGTTTCTCCCCTGTGCGCCGGTTCTCAGATGGGGCTGCG AGCATCCAGGCCTTCAAAGCTCACCTGGAAAAAATGGGCAACAACAGCAGCATCAAACAG CTGCAGCAGGAGTGTGAGCAGCTGCAGAAGATGTACGGGGGGCAGATTGATGAAAGAACC CTGGAGAAGACCCAGCAGCAGCATATGTTATACCAGCAGGAGCAGCACCATCAAATTCTC CAGCAACAAATTCAAGACTCTATCTGTCCTCCTCAGCCATCTCCACCTCTTCAGGCTGCA TGTGAAAATCAGCCAGCCCTCCTTACCCATCAGCTCCAGAGGTTAAGGATTCAGCCTTCA AGCCCACCCCCCAACCACCCCAACAACCATCTCTTCAGGCAGCCCAGTAATAGTCCTCCC CCCATGAGCAGTGCCATGATCCAGCCTCACGGGGCTGCATCTTCTTCCCAGTTTCAAGGC TTACCTTCCCGCAGTGCAATCTTTCAGCAGCAACCTGAGAACTGTTCCTCTCCTCCCAAC GTGGCACTAACCTGCTTGGGTATGCAGCAGCCTGCTCAGTCACAGCAGGTCACCATCCAA GTCCAAGAGCCTGTTGACATGCTCAGCAACATGCCAGGCACAGCTGCAGGCTCCAGTGGG CGCGGCATCTCCATCAGCCCCAGTGCTGGTCAGATGCAGATGCAGCACCGTACCAACCTG ATGGCCACCCTCAGCTATGGGCACCGTCCCTTGTCCAAGCAGCTGAGTGCTGACAGTGCA GAGGCTCACAGCTTGAACGTGAATCGGTTCTCCCCTGCTAACTACGACCAGGCGCATTTA CACCCCCATCTGTTTTCGGACCAGTCCCGGGGTTCCCCCAGCAGCTACAGCCCTTCAACA GGAGTGGGGTTCTCTCCAACCCAAGCCCTGAAAGTCCCTCCACTTGACCAATTCCCCACC TTCCCTCCCAGTGCACATCAGCAGCCGCCACACTATACCACGTCGGCACTACAGCAGGCC CTGCTGTCTCCCACGCCGCCAGACTATACAAGACACCAGCAGCCGGCACTGATGCATTCA GAGAGCATGGAGGAGGACTGCTCGTGTGAGGGGGCCAAGGATGGCTTCCAAGACAGTAAG AGTTCAAGTACATTGACCAAAGGTTGCCATGACAGCCCTCTGCTCTTGAGTACCGGTGGA CCTGGGGACCCTGAATCTTTGCTAGGAACTGTGAGTCATGCCCAAGAATTGGGGATACAT CCCTATGGTCATCAGCCAACTGCTGCATTCAGTAAAAATAAGGTGCCCAGCAGAGAGCCT GTCATAGGGAACTGCATGGATAGAAGTTCTCCAGGACAAGCAGTGGAGCTGCCGGATCAC AATGGGCTCGGGTACCCAGCACGCCCCTCCGTCCATGAGCACCACAGGCCCCGGGCCCTC CAGAGACACCACACGATCCAGAACAGCGACGATGCTTATGTACAGCTGGATAACTTGCCA GGAATGAGTCTCGTGGCTGGGAAAGCACTTAGCTCTGCCCGGATGTCGGATGCAGTTCTC AGTCAGTCTTCGCTCATGGGCAGCCAGCAGTTTCAGGATGGGGAAAATGAGGGTCCCCCA CGGCCCTTCAGGATGAAAGCTGCGGTGCTGACCTTGGCCGTGCTCTTCCTGACGGGGAGC CAGGCTCGGCATTTCTGGCAGCAAGATGAACCCCCCCAGAGCCCCTGGGATCGAGTGAAG GACCTGGCCACTGTGTACGTGGATGTGCTCAAAGACAGCGGCAGAGACTATGTGTCCCAG TTTGAAGGCTCCGCCTTGGGAAAACAGCTAAACCTAAAGCTCCTTGACAACTGGGACAGC GTGACCTCCACCTTCAGCAAGCTGCGCGAACAGCTCGGCCCTGTGACCCAGGAGTTCTGG GATAACCTGGAAAAGGAGACAGAGGGCCTGAGGCAGGAGATGAGCAAGGATCTGGAGGAG GTGAAGGCCAAGGTGCAGCCCTACCTGGACGACTTCCAGAAGAAGTGGCAGGAGGAGATG GAGCTCTACCGCCAGAAGGTGGAGCCGCTGCGCGCAGAGCTCCAAGAGGGCGCGCGCCAG AAGCTGCACGAGCTGCAAGAGAAGCTGAGCCCACTGGGCGAGGAGATGCGCGACCGCGCG CGCGCCCATGTGGACGCGCTGCGCACGCATCTGGCCCCCTACAGCGACGAGCTGCGCCAG CGCTTGGCCGCGCGCCTTGAGGCTCTCAAGGAGAACGGCGGCGCCAGACTGGCCGAGTAC CACGCCAAGGCCACCGAGCATCTGAGCACGCTCAGCGAGAAGGCCAAGCCCGCGCTCGAG GACCTCCGCCAAGGCCTGCTGCCCGTGCTGGAGAGCTTCAAGGTCAGCTTCCTGAGCGCT CTCGAGGAGTACACTAAGAAGCTCAACACCCAGTGA >apo2_4|geneid_v1.2_predicted_protein_4|1392_AA KTPTFQFAAKVAIKIIDKTQLDEENLKKIFREVQIMKMLCHPHIIRLYQVMETERMIYLV TEYASGGEIFDHLVAHGRMAEKEARRKFKQIVTAVYFCHCRNIVHRDLKAENLLLDANLN IKIADFGFSNLFTPGQLLKTWCGSPPYAAPELFEGKEYDGPKVDIWSLGVVLYVLVCGAL PFDGSTLQNLRARVLSGKFRIPFFMSTGYFHLLGSHCNVVLNAKDKRLKAGCLSIAECEH LIRHMLVLDPNKRLSMEQICKHKWMKLGDADPNFDRLIAECQQLKEERQVDPLNEDVLLA MEDMGLDKEQTLQSLRSDAYDHYSAIYSLLCDRHKRHKTLRLGALPSMPRALAFQAPVNI QPDGTLNLDSDEGEEPSPEALVRYLSMRRHTVGVADPRTEVMEDLQKLLPGFPGVNPQAP FLQVAPNVNFMHNLLPMQNLQPTGQLEYKEQSLLQPPTLQLLNGMGPLGRRASDGGANIQ LHAQQLLKRPRGPSPLVTMTPAVPAVTPVDEESSDGEPDQEAVQRYLANRSKRHTLAMTN PTAEIPPDLQRQLGQQPFRSRVWPPHLVPDQHRSTYKDSNTLHLPTERFSPVRRFSDGAA SIQAFKAHLEKMGNNSSIKQLQQECEQLQKMYGGQIDERTLEKTQQQHMLYQQEQHHQIL QQQIQDSICPPQPSPPLQAACENQPALLTHQLQRLRIQPSSPPPNHPNNHLFRQPSNSPP PMSSAMIQPHGAASSSQFQGLPSRSAIFQQQPENCSSPPNVALTCLGMQQPAQSQQVTIQ VQEPVDMLSNMPGTAAGSSGRGISISPSAGQMQMQHRTNLMATLSYGHRPLSKQLSADSA EAHSLNVNRFSPANYDQAHLHPHLFSDQSRGSPSSYSPSTGVGFSPTQALKVPPLDQFPT FPPSAHQQPPHYTTSALQQALLSPTPPDYTRHQQPALMHSESMEEDCSCEGAKDGFQDSK SSSTLTKGCHDSPLLLSTGGPGDPESLLGTVSHAQELGIHPYGHQPTAAFSKNKVPSREP VIGNCMDRSSPGQAVELPDHNGLGYPARPSVHEHHRPRALQRHHTIQNSDDAYVQLDNLP GMSLVAGKALSSARMSDAVLSQSSLMGSQQFQDGENEGPPRPFRMKAAVLTLAVLFLTGS QARHFWQQDEPPQSPWDRVKDLATVYVDVLKDSGRDYVSQFEGSALGKQLNLKLLDNWDS VTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEM ELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAPYSDELRQ RLAARLEALKENGGARLAEYHAKATEHLSTLSEKAKPALEDLRQGLLPVLESFKVSFLSA LEEYTKKLNTQ* ------------------------------------------------------------------------