FGENESH 2.4 Prediction of potential genes in Homo_sapiens genomic DNA Time : Fri Mar 10 05:58:35 2006 Seq name: apo2 Length of sequence: 275000 Number of predicted genes 5 in +chain 2 in -chain 3 Number of predicted exons 41 in +chain 6 in -chain 35 Positions of predicted genes and exons: Variant 1 from 1, Score:368.745453 G Str Feature Start End Score ORF Len 1 - PolA 7985 -4.78 1 - 1 CDSl 8062 - 8392 9.76 8062 - 8391 330 1 - 2 CDSi 8699 - 8754 -3.84 8701 - 8754 54 1 - 3 CDSi 9190 - 9282 2.65 9190 - 9282 93 1 - 4 CDSf 9619 - 10179 56.61 9619 - 10179 561 1 - TSS 10887 -13.69 2 - PolA 11088 -4.97 2 - 1 CDSl 11266 - 11396 5.21 11266 - 11394 129 2 - 2 CDSf 11754 - 11802 19.57 11755 - 11802 48 2 - TSS 11915 -7.89 3 + TSS 18487 -7.89 3 + 1 CDSf 19194 - 19248 15.82 19194 - 19247 54 3 + 2 CDSi 19384 - 19507 8.57 19386 - 19505 120 3 + 3 CDSl 21375 - 21495 -0.01 21376 - 21495 120 3 + PolA 21656 1.12 4 - PolA 24379 1.12 4 - 1 CDSl 24419 - 25022 59.24 24419 - 25021 603 4 - 2 CDSi 25612 - 25768 17.59 25614 - 25766 153 4 - 3 CDSi 25956 - 26018 5.34 25957 - 26016 60 4 - 4 CDSi 35985 - 36219 10.99 35986 - 36219 234 4 - 5 CDSi 37731 - 37894 4.69 37731 - 37892 162 4 - 6 CDSi 46421 - 46673 4.94 46422 - 46673 252 4 - 7 CDSi 47040 - 47310 12.34 47040 - 47309 270 4 - 8 CDSi 47876 - 48215 21.09 47878 - 48213 336 4 - 9 CDSi 49885 - 49994 5.21 49886 - 49993 108 4 - 10 CDSi 50452 - 50516 2.58 50454 - 50516 63 4 - 11 CDSi 50813 - 50938 6.24 50813 - 50938 126 4 - 12 CDSi 52279 - 52429 12.59 52279 - 52428 150 4 - 13 CDSi 56557 - 56700 16.84 56559 - 56699 141 4 - 14 CDSi 58942 - 59012 11.83 58944 - 59012 69 4 - 15 CDSi 62092 - 62247 12.50 62092 - 62247 156 4 - 16 CDSi 62514 - 62667 4.51 62514 - 62666 153 4 - 17 CDSi 63769 - 63878 10.73 63771 - 63878 108 4 - 18 CDSi 64477 - 64620 6.66 64477 - 64620 144 4 - 19 CDSi 64864 - 64974 13.97 64864 - 64974 111 4 - 20 CDSi 65535 - 65684 12.34 65535 - 65684 150 4 - 21 CDSi 71678 - 71700 0.85 71678 - 71698 21 4 - 22 CDSi 84864 - 84987 5.78 84865 - 84987 123 4 - 23 CDSi 85804 - 85928 11.92 85804 - 85926 123 4 - 24 CDSi 115830 - 115991 13.82 115831 - 115989 159 4 - 25 CDSi 142655 - 142718 6.56 142656 - 142718 63 4 - 26 CDSi 145559 - 145675 9.39 145559 - 145675 117 4 - 27 CDSi 149846 - 149941 2.96 149846 - 149941 96 4 - 28 CDSi 190449 - 190512 6.25 190449 - 190511 63 4 - 29 CDSf 195381 - 195415 6.04 195383 - 195415 33 4 - TSS 195656 -9.09 5 + TSS 229726 -7.69 5 + 1 CDSf 229834 - 229893 7.78 229834 - 229893 60 5 + 2 CDSi 244031 - 244159 8.68 244031 - 244159 129 5 + 3 CDSl 272390 - 272491 0.68 272390 - 272491 102 5 + PolA 272629 1.12 Predicted protein(s): >FGENESH: 1 4 exon (s) 8062 - 10179 346 aa, chain - MERVLRENADSLQASLRPHADELKAKIDQNVEELKGRLTPYADEFKVKIDQTVEELRRSL APYAQDTQEKLNHQLEGLTFQMKKNAEELKARISASAEELRQRLAPLAEDVRGNLRGNTE GLQKSLAELGGHLDQQVEEFRRRVEPYGENFNKALVQQMEQLRQKLGPHAGDVEGHLSFL EKDLRDKLGRWGGNHDWAELSSGLAGDTQDWGDETAGENWGLRLGDRDESGEEGQSRGMQ ALQGFPGRGLEHAKEEGEVPLEGVLGPPPSLSRCPQGSGPQHGLAQAYTPLAPGAGLVGG MYAWESDKPRFESWLFDRLPGDVGRIIELLLEDMGNDNPLLREELC >FGENESH: 2 2 exon (s) 11266 - 11802 59 aa, chain - MFLKAVVLTLALVAVAGARAEVSADQVATVMWDYFSQLSNNAKEAVEHLQKSELTQQLK >FGENESH: 3 3 exon (s) 19194 - 21495 99 aa, chain + MQPRVLLVVALLALLASARASEAEDASLLSFMQGYMKHATKTAKDALSSVQESQVAQQAR GWVTDGFSSLKDYWSTVKDKFSEFWDLDPEVRPTSAVAA >FGENESH: 4 29 exon (s) 24419 - 195415 1462 aa, chain - MASVHFCYPILRWTDRIKFAFVNSCDNVEGGLKKTPTFQFAAKVGAEFLSLLSGLIRQLC HCQATVAIKIIDKTQLDEENLKKIFREVQIMKMLCHPHIIRLYQVMETERMIYLVTEYAS GGEIFDHLVAHGRMAEKEARRKFKQIVTAVYFCHCRNIVHRDLKAENLLLDANLNIKIAD FGFSNLFTPGQLLKTWCGSPPYAAPELFEGKEYDGPKVDIWSLGVVLYVLVCGALPFDGS TLQNLRARVLSGKFRIPFFMSTGLVPELDKRLKAGCLSIAECEHLIRHMLVLDPNKRLSM EQICKHKWMKLGDADPNFDRLIAECQQLKEERQVDPLNEDVLLAMEDMGLDKEQTLQSLR SDAYDHYSAIYSLLCDRHKRHKTLRLGALPSMPRALAFQAPVNIQPDGTLNLDSDEGEEP SPEALVRYLSMRRHTVGVADPRTEVMEDLQKLLPGFPGVNPQAPFLQVAPNVNFMHNLLP MQNLQPTGQLEYKEQSLLQPPTLQLLNGMGPLGRRASDGGANIQLHAQQLLKRPRGPSPL VTMTPAVPAVTPVDEESSDGEPDQEAVQRYLANRSKRHTLAMTNPTAEIPPDLQRQLGQQ PFRSRVWPPHLVPDQHRSTYKDSNTLHLPTERFSPVRRFSDGAASIQAFKAHLEKMGNNS SIKQLQQECEQLQKMYGGQIDERTLEKTQQQHMLYQQEQHHQILQQQIQPSPPLQAACEN QPALLTHQLQRLRIQPSSPPPNHPNNHLFRQPSNSPPPMSSAMIQPHGAASSSQFQGLPS RSAIFQQQPENCSSPPNVALTCLGMQQPAQSQQVTIQVQEPVDMLSNMPGTAAGSSGRGI SISPSAGQMQMQHRTNLMATLSYGHRPLSKQLSADSAEAHSLNVNRFSPANYDQAHLHPH LFSDQSRGSPSSYSPSTGVGFSPTQALKVPPLDQFPTFPPSAHQQPPHYTTSALQQALLS PTPPDYTRHQQPALMHSESMEEDCSCEGAKDGFQDSKSSSTLTKGCHDSPLLLSTGGPGD PESLLGTVSHAQELGIHPYGHQPTAAFSKNKVPSREPVIGNCMDRSSPGQAVELPDHNGL GYPARPSVHEHHRPRALQRHHTIQNSDDAYVQLDNLPGMSLVAGKALSSARMSDAVLSQS SLMGSQQFQDGENEGEEPYAWGTPEKFLEGPPSIFRNCSSLRRKSSWGGPPRPFRMKAAV LTLAVLFLTGSQARHFWQQDEPPQSPWDRVKDLATVYVDVLKDSGRDYVSQFEGSALGKQ LNLKLLDNWDSVTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAKVQPYL DDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRT HLAPYSDELRQRLAARLEALKENGGARLAEYHAKATEHLSTLSEKAKPALEDLRQGLLPV LESFKVSFLSALEEYTKKLNTQ >FGENESH: 5 3 exon (s) 229834 - 272491 96 aa, chain + MGKKIAKQVRGDVEESQVSQRKKQKHRDKVNHSVSLREKIMEPDSNPGLSGLDEGTEEKV GLQHMNQDCFRQKQKTTYYKKMSTCSTEHYTSSEQI ------------------------------------------------------------------------