FGENESH 2.4 Prediction of potential genes in Homo_sapiens genomic DNA Time : Fri Mar 10 05:52:55 2006 Seq name: apo1 Length of sequence: 275000 Number of predicted genes 8 in +chain 2 in -chain 6 Number of predicted exons 57 in +chain 7 in -chain 50 Positions of predicted genes and exons: Variant 1 from 1, Score:523.043274 G Str Feature Start End Score ORF Len 1 - PolA 1928 -1.67 1 - 1 CDSl 3118 - 3219 0.29 3118 - 3219 102 1 - 2 CDSi 5228 - 5384 11.00 5228 - 5383 156 1 - 3 CDSi 6666 - 6724 -0.82 6668 - 6724 57 1 - 4 CDSi 9401 - 9438 -0.42 9401 - 9436 36 1 - 5 CDSi 10303 - 10499 9.57 10304 - 10498 195 1 - 6 CDSi 10636 - 10762 -0.87 10638 - 10760 123 1 - 7 CDSi 12156 - 12321 3.94 12157 - 12321 165 1 - 8 CDSi 28607 - 28648 3.50 28607 - 28648 42 1 - 9 CDSf 69822 - 69932 6.96 69822 - 69932 111 1 - TSS 71289 -5.09 2 + TSS 130052 -5.99 2 + 1 CDSf 130700 - 130789 4.08 130700 - 130789 90 2 + 2 CDSi 132799 - 132867 3.27 132799 - 132867 69 2 + 3 CDSi 133530 - 133666 5.48 133530 - 133664 135 2 + 4 CDSl 139414 - 139570 5.57 139415 - 139570 156 2 + PolA 140127 1.12 3 - PolA 161041 -1.08 3 - 1 CDSl 162093 - 162186 3.56 162093 - 162185 93 3 - 2 CDSi 170757 - 170838 7.88 170759 - 170836 78 3 - 3 CDSi 171377 - 171561 18.18 171378 - 171560 183 3 - 4 CDSi 171880 - 172018 10.39 171882 - 172016 135 3 - 5 CDSi 172685 - 172790 6.81 172686 - 172790 105 3 - 6 CDSi 174346 - 174563 4.24 174346 - 174561 216 3 - 7 CDSi 176164 - 176877 25.19 176165 - 176875 711 3 - 8 CDSi 178973 - 179057 10.37 178974 - 179057 84 3 - 9 CDSi 183740 - 183833 15.05 183740 - 183832 93 3 - 10 CDSf 186433 - 186575 25.89 186435 - 186575 141 3 - TSS 187107 -6.49 4 - PolA 192183 1.12 4 - 1 CDSl 192536 - 192670 11.23 192536 - 192670 135 4 - 2 CDSi 193383 - 193448 5.88 193383 - 193448 66 4 - 3 CDSi 195769 - 195855 9.76 195769 - 195855 87 4 - 4 CDSi 196530 - 196640 16.76 196530 - 196640 111 4 - 5 CDSi 197141 - 197230 7.27 197141 - 197230 90 4 - 6 CDSi 197989 - 198042 0.99 197989 - 198042 54 4 - 7 CDSi 198470 - 198532 4.08 198470 - 198532 63 4 - 8 CDSi 198710 - 198757 2.24 198710 - 198757 48 4 - 9 CDSi 199125 - 199247 15.89 199125 - 199247 123 4 - 10 CDSi 199407 - 199493 8.11 199407 - 199493 87 4 - 11 CDSi 200122 - 200192 -3.04 200122 - 200190 69 4 - 12 CDSi 200580 - 200670 15.56 200581 - 200670 90 4 - 13 CDSf 201093 - 201251 9.26 201093 - 201251 159 4 - TSS 201732 -5.29 5 - PolA 202238 1.12 5 - 1 CDSl 203739 - 204762 93.01 203739 - 204761 1023 5 - 2 CDSi 205197 - 205308 7.02 205199 - 205306 108 5 - 3 CDSf 205423 - 205462 14.14 205424 - 205462 39 5 - TSS 206919 -5.69 6 - PolA 229808 -1.67 6 - 1 CDSl 229918 - 229979 -2.11 229918 - 229977 60 6 - 2 CDSi 234361 - 234400 0.96 234362 - 234400 39 6 - 3 CDSi 234619 - 235221 47.26 234619 - 235221 603 6 - 4 CDSi 235930 - 235963 -7.31 235930 - 235962 33 6 - 5 CDSi 236270 - 236396 10.10 236272 - 236394 123 6 - 6 CDSf 236754 - 236802 18.93 236755 - 236802 48 6 - TSS 236915 -6.89 7 + TSS 243487 -6.89 7 + 1 CDSf 244194 - 244248 15.19 244194 - 244247 54 7 + 2 CDSi 244384 - 244507 10.40 244386 - 244505 120 7 + 3 CDSl 246375 - 246495 -1.16 246376 - 246495 120 7 + PolA 246656 1.12 8 - PolA 249379 1.12 8 - 1 CDSl 249419 - 250022 65.11 249419 - 250021 603 8 - 2 CDSi 250612 - 250768 15.96 250614 - 250766 153 8 - 3 CDSi 250956 - 251018 6.56 250957 - 251016 60 8 - 4 CDSi 260985 - 261219 6.71 260986 - 261219 234 8 - 5 CDSi 262731 - 262894 5.84 262731 - 262892 162 8 - 6 CDSi 271421 - 271673 0.94 271422 - 271673 252 8 - 7 CDSi 272040 - 272130 8.68 272040 - 272129 90 8 - 8 CDSi 272876 - 273215 23.83 272878 - 273213 336 8 - 9 CDSf 274885 - 274912 10.31 274886 - 274912 27 Predicted protein(s): >FGENESH: 1 9 exon (s) 3118 - 69932 332 aa, chain - MSVPPWGGQALVGGPGSAGGLVEEVESKDGQDGAQKKFGQGHGGSLSDAEEEEGWAGAGR NSRWPKDHNSGSMGAGAAEGSTKLCDPQSLAPGEELSVFLLTAAAKGPNLLRPRPLAQHP QAWHGAAMVPKGCLAVVCSRGMMGVLAGRKDVEHVTVQIPDEPKSQLRLLTESQCLVGSP KPECPLQGPDGLFCGDPHKEITSFERLGLAEDKKALSKFARCEQEPMGGDLSLSWGSGLY PAEEHLWLEEVRAEMQELIPGFCPAPSSEAGPPGVLAADEELDIEGQVSSGITGTNCQLG GSSPSSLPVAAAADTTYGSESAQENWWGHELV >FGENESH: 2 4 exon (s) 130700 - 139570 150 aa, chain + MSETILPMQISQDSHRRKLHYTNQSNEVPMGRHSRKLEAGGKRKEKQLQELAELVRSQAP ANSAPIKRAGSREPSDQGLETQRPFLITGLEESGCQLVRVAPSPHLLSQRCSESPGTSKV THAREGSQWESSSECGKGAERRMYNPGPGV >FGENESH: 3 10 exon (s) 162093 - 186575 619 aa, chain - MAAAPPLSKAEYLKRYLSGADAGVDRGSESGRKRRKKRPKPGGAGGKGMRIVDDDVSWTA ISTTKLEKEEEEDDGDLPVVAEFVDERPEEVKQMEAFRSSAKWKLLGGHNEDLPSNRHFR HDTPDSSPRRVRHGTPDPSPRKDRHDTPDPSPRRARHDTPDPSPLRGARHDSDTSPPRRI RHDSSDTSPPRRARHDSPDPSPPRRPQHNSSGASPRRVRHDSPDPSPPRRARHGSSDISS PRRVHNNSPDTSRRTLGSSDTQQLRRARHDSPDLAPNVTYSLPRTKSGKAPERASSKTSP HWKESGASHLSFPKNSKYEYDPDISPPRKKQAKSHFGDKKQLDSKGDCQKATDSDLSSPR HKQSPGHQDSDSDLSPPRNRPRHRSSDSDLSPPRRRQRTKSSDSDLSPPRRSQPPGKKAA HMYSGAKTGLVLTDIQREQQELKEQDQETMAFEAEFQYAETVFRDKSGRKRNLKLERLEQ RRKAEKDSERDELYAQWGKGLAQSRQQQQNVEDAMKEMQKPLARYIDDEDLDRMLREQER EGDPMANFIKKNKAKENKNKKVRPRYSGPAPPPNRFNIWPGYRWDGVDRSNGFEQKRFAR LASKKAVEELAYKWSVEDM >FGENESH: 4 13 exon (s) 192536 - 201251 394 aa, chain - MTRLLLTKIPFFREIIVSSFSCEHCGWNNTEIQSAGRIQDQGVRYTLSVRALEDMNREVV KTDSAATRIPELDFEIPAFSQKGALTTVEGLITRAISGLEQDQPARRANKDATAERIDEF IVKLKELKQVASPFTLIIDDPSGNSFVENPHAPQKDDALVITHYNRTRQQEEMLGLQEEA PAEKPEEEDLRNEVLQFSTNCPECNAPAQTNMKLEVIIMATNCENCGHRTNEVKSGGAVE PLGTRITLHITDASDMTRDLLKSETCSVEIPELEFELGMAVLGGKFTTLEGLLKDIRELV TKNPFTLGDSSNPGQTERLQEFSQKMDQIIEGNMKAHFIMDDPAGNSYLQNVYAPEDDPE MKVERYKRTFDQNEELGLNDMKTEGYEAGLAPQR >FGENESH: 5 3 exon (s) 203739 - 205462 391 aa, chain - MAAVLTWALALLSAFSATQARKGFWDYFSQTSGDKGRVEQIHQQKMAREPAGSVRDDLGT KEMMEASSLTAWISVPFSRTLKDSLEQDLNNMNKFLEKLRPLSGSEAPRLPQDPVGMRRQ LQEELEEVKARLQPYMAEAHELVGWNLEGLRQQLKPYTMDLMEQVALRVQELQEQLRVVG EDTKAQLLGGVDEAWALLQGLQSRVVHHTGRFKELFHPYAESLVSGIGRHVQELHRSVAP HAPASPARLSRCVQVLSRKLTLKAKALHARIQQNLDQLREELSRAFAGTGTEEGAGPDPQ MLSEEVRQRLQAFRQDTYLQIAAFTRAIDQETEEVQQQLAPPPPGHSAFAPEFQQTDSGK VLSKLQARLDDLWEDITHSLHDQGHSHLGDP >FGENESH: 6 6 exon (s) 229918 - 236802 304 aa, chain - MFLKAVVLTLALVAVAGARAEVSADQVATVMWDYFSQLSNNAKEAVEHLQKSELTQQLKK TGPSGIKGREAEQLRRQLTPYAQRMERVLRENADSLQASLRPHADELKAKIDQNVEELKG RLTPYADEFKVKIDQTVEELRRSLAPYAQDTQEKLNHQLEGLTFQMKKNAEELKARISAS AEELRQRLAPLAEDVRGNLRGNTEGLQKSLAELGGHLDQQVEEFRRRVEPYGENFNKALV QQMEQLRQKLGPHAGDVEGHLSFLEKDLRDKKFWYELEDTCPVGAAELTGDLGNSLYLPF SEIL >FGENESH: 7 3 exon (s) 244194 - 246495 99 aa, chain + MQPRVLLVVALLALLASARASEAEDASLLSFMQGYMKHATKTAKDALSSVQESQVAQQAR GWVTDGFSSLKDYWSTVKDKFSEFWDLDPEVRPTSAVAA >FGENESH: 8 9 exon (s) 249419 - 274912 644 aa, chain - MSSAMIQPHGAASSSQFQGLPSRSAIFQQQPENCSSPPNVALTCLGMQQPAQSQQVTIQV QEPVDMLSNMPGTAAGSSGRGISISPSAGQMQMQHRTNLMATLSYGHRPLSKQLSADSAE AHSAHQQPPHYTTSALQQALLSPTPPDYTRHQQPALMHSESMEEDCSCEGAKDGFQDSKS SSTLTKGCHDSPLLLSTGGPGDPESLLGTVSHAQELGIHPYGHQPTAAFSKNKVPSREPV IGNCMDRSSPGQAVELPDHNGLGYPARPSVHEHHRPRALQRHHTIQNSDDAYVQLDNLPG MSLVAGKALSSARMSDAVLSQSSLMGSQQFQDGENEGEEPYAWGTPEKFLEGPPSIFRNC SSLRRKSSWGGPPRPFRMKAAVLTLAVLFLTGSQARHFWQQDEPPQSPWDRVKDLATVYV DVLKDSGRDYVSQFEGSALGKQLNLKLLDNWDSVTSTFSKLREQLGPVTQEFWDNLEKET EGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQE KLSPLGEEMRDRARAHVDALRTHLAPYSDELRQRLAARLEALKENGGARLAEYHAKATEH LSTLSEKAKPALEDLRQGLLPVLESFKVSFLSALEEYTKKLNTQ ------------------------------------------------------------------------