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|sgp2| predictions on sequence submitted from /paris.upf.edu/ are:


## date Thu Mar 16 11:50:33 2006
## source-version: geneid v 1.1 -- geneid@imim.es
# Sequence seq3 - Length = 90000 bps
# Optimal Gene Structure. 1 genes. Score = 185.034169 
# Gene 1 (Forward). 9 exons. 485 aa. Score = 185.034169 
Internal       53      203	22.35	+ 0 1	 3.59	 3.06	 9.87	11.25	AA   1: 51 gene_1
Internal     1115     1342	28.90	+ 2 1	 0.16	 0.47	 9.16	27.88	AA  51:127 gene_1
Internal     4147     4247	 9.23	+ 2 0	 3.57	 3.66	 2.06	 7.96	AA 127:160 gene_1
Internal    17056    17304	23.00	+ 0 0	 4.56	 2.69	 9.69	13.24	AA 161:243 gene_1
Internal    31972    32127	21.49	+ 0 0	 4.13	 4.49	 4.21	15.16	AA 244:295 gene_1
Internal    42376    42465	14.31	+ 0 0	 4.62	 4.87	 3.90	 7.08	AA 296:325 gene_1
Internal    54222    54394	27.71	+ 0 2	 4.69	 0.81	 9.67	18.63	AA 326:383 gene_1
Internal    54993    55098	10.71	+ 1 0	 5.57	 2.71	 1.64	 8.41	AA 383:418 gene_1
Terminal    56442    56642	27.35	+ 0 0	 0.67	 0.00	18.52	13.45	AA 419:485 gene_1

>seq3|sgp2_v1.0_predicted_cDNA_1|1455_NN
TTGTTATTAATTGTGATTGGAGCTATAGCAGTTGTCGCAGTTTTACAACCCTACATCTTT
GTTGCAACAGTGCCAGTGATAGTGGCTTTTATTATGTTGAGAGCATATTTCCTCCAAACC
TCACAGCAACTCAAACAACTGGAATCTGAAGGCAGGAGTCCAATTTTCACTCATCTTGTT
ACAAGCTTAAAAGGACTATGGACACTTCGTGCCTTCGGACGGCAGCCTTACTTTGAAACT
CTGTTCCACAAAGCTCTGAATTTACATACTGCCAACTGGTTCTTGTACCTGTCAACACTG
CGCTGGTTCCAAATGAGAATAGAAATGATTTTTGTCATCTTCTTCATTGCTGTTACCTTC
ATTTCCATTTTAACAACAGGAGAAGGAGAAGGAAGAGTTGGTATTATCCTGACTTTAGCC
ATGAATATCATGAGTACATTGCAGTGGGCTGTAAACTCCAGCATAGATGTGGATAGCTTG
ATGCGATCTGTGAGCCGAGTCTTTAAGTTCATTGACATGCCAACAGAAGGTAAACCTACC
AAGTCAACCAAACCATACAAGAATGGCCAACTCTCGAAAGTTATGATTATTGAGAATTCA
CACGTGAAGAAAGATGACATCTGGCCCTCAGGGGGCCAAATGACTGTCAAAGATCTCACA
GCAAAATACACAGAAGGTGGAAATGCCATATTAGAGAACATTTCCTTCTCAATAAGTCCT
GGCCAGAGGGTGGGCCTCTTGGGAAGAACTGGATCAGGGAAGAGTACTTTGTTATCAGCT
TTTTTGAGACTACTGAACACTGAAGGAGAAATCCAGATCGATGGTGTGTCTTGGGATTCA
ATAACTTTGCAACAGTGGAGGAAAGCCTTTGGAGTGATACCACAGAAAGTATTTATTTTT
TCTGGAACATTTAGAAAAAACTTGGATCCCTATGAACAGTGGAGTGATCAAGAAATATGG
AAAGTTGCAGATGAGGTTGGGCTCAGATCTGTGATAGAACAGTTTCCTGGGAAGCTTGAC
TTTGTCCTTGTGGATGGGGGCTGTGTCCTAAGCCATGGCCACAAGCAGTTGATGTGCTTG
GCTAGATCTGTTCTCAGTAAGGCGAAGATCTTGCTGCTTGATGAACCCAGTGCTCATTTG
GATCCAGTAACATACCAAATAATTAGAAGAACTCTAAAACAAGCATTTGCTGATTGCACA
GTAATTCTCTGTGAACACAGGATAGAAGCAATGCTGGAATGCCAACAATTTTTGGTCATA
GAAGAGAACAAAGTGCGGCAGTACGATTCCATCCAGAAACTGCTGAACGAGAGGAGCCTC
TTCCGGCAAGCCATCAGCCCCTCCGACAGGGTGAAGCTCTTTCCCCACCGGAACTCAAGC
AAGTGCAAGTCTAAGCCCCAGATTGCTGCTCTGAAAGAGGAGACAGAAGAAGAGGTGCAA
GATACAAGGCTTTAG

>seq3|sgp2_v1.0_predicted_protein_1|485_AA
LLLIVIGAIAVVAVLQPYIFVATVPVIVAFIMLRAYFLQTSQQLKQLESEGRSPIFTHLV
TSLKGLWTLRAFGRQPYFETLFHKALNLHTANWFLYLSTLRWFQMRIEMIFVIFFIAVTF
ISILTTGEGEGRVGIILTLAMNIMSTLQWAVNSSIDVDSLMRSVSRVFKFIDMPTEGKPT
KSTKPYKNGQLSKVMIIENSHVKKDDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISP
GQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLQQWRKAFGVIPQKVFIF
SGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCL
ARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVI
EENKVRQYDSIQKLLNERSLFRQAISPSDRVKLFPHRNSSKCKSKPQIAALKEETEEEVQ
DTRL*

    ------------------------------------------------------------------------
    Species:
    //

    Command:
    |sgp2 -g D --query 31569paris.upf.edu.seq1.fasta --tblastx
    blast31569paris.upf.edu.blast |

    Running time:
    0.63 secs

	 

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