Genome BioInformatics Research Lab Help | News | People | Research Software Publications | Links Resources & Datasets | Gene Predictions | Seminars & Courses IMIM * UPF * CRG * GRIB HOME Software |sgp2| |sgp2| server Predictions <#top> |sgp2| Web Server |sgp2| predictions on sequence submitted from /paris.upf.edu/ are: ## date Thu Mar 16 16:47:02 2006 ## source-version: geneid v 1.1 -- geneid@imim.es # Sequence subseq2:42000-105000 - Length = 63000 bps # Optimal Gene Structure. 1 genes. Score = 144.667420 # Gene 1 (Forward). 3 exons. 179 aa. Score = 144.667420 First 12597 12626 3.47 + 0 0 1.86 2.99 3.60 1.68 AA 1: 10 gene_1 Internal 14059 14223 71.55 + 0 0 4.08 5.26 35.45 20.31 AA 11: 65 gene_1 Terminal 46480 46821 69.64 + 0 0 6.15 0.00 19.63 45.92 AA 66:179 gene_1 >subseq2:42000-105000|sgp2_v1.0_predicted_cDNA_1|537_NN ATGTCTGGGGGCAAATACGTAGACTCGGAGGGACATCTCTACACCGTTCCCATCCGGGAA CAGGGCAACATCTACAAGCCCAACAACAAGGCCATGGCAGACGAGCTGAGCGAGAAGCAA GTGTACGACGCGCACACCAAGGAGATCGACCTGGTCAACCGCGACCCTAAACACCTCAAC GATGACGTGGTCAAGATTGACTTTGAAGATGTGATTGCAGAACCAGAAGGGACACACAGT TTTGACGGCATTTGGAAGGCCAGCTTCACCACCTTCACTGTGACGAAATACTGGTTTTAC CGCTTGCTGTCTGCCCTCTTTGGCATCCCGATGGCACTCATCTGGGGCATTTACTTCGCC ATTCTCTCTTTCCTGCACATCTGGGCAGTTGTACCATGCATTAAGAGCTTCCTGATTGAG ATTCAGTGCATCAGCCGTGTCTATTCCATCTACGTCCACACCGTCTGTGACCCACTCTTT GAAGCTGTTGGGAAAATATTCAGCAATGTCCGCATCAACTTGCAGAAAGAAATATAA >subseq2:42000-105000|sgp2_v1.0_predicted_protein_1|179_AA MSGGKYVDSEGHLYTVPIREQGNIYKPNNKAMADELSEKQVYDAHTKEIDLVNRDPKHLN DDVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSALFGIPMALIWGIYFA ILSFLHIWAVVPCIKSFLIEIQCISRVYSIYVHTVCDPLFEAVGKIFSNVRINLQKEI* ------------------------------------------------------------------------ Species: // Command: |sgp2 -g D --query 12081paris.upf.edu.seq1.fasta --tblastx blast12081paris.upf.edu.blast | Running time: 0.52 secs Disclaimer webmaster