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Scores Table
Alignment Score Sequence Number Sequence Name Sequence Length
SeqA Name Len(aa) SeqB Name Len(aa) Score
=========================================================================
1 GENEID_protB2.fa 1555 2 GENSCAN_protB2.fa 1731 96
1 GENEID_protB2.fa 1555 3 FGENESH_protB2.fa 1588 93
2 GENSCAN_protB2.fa 1731 3 FGENESH_protB2.fa 1588 97
=========================================================================
PLEASE NOTE: Some scores may be missing from
the above table if the alignment was done using multiple CPU mode.
Please check the output.
Alignment Score Sequence Number Sequence Name Sequence Length
Alignment
CLUSTAL W (1.82) multiple sequence alignment
GENSCAN_protB2.fa M T E AI T E AAVA SS EE V S EE R DD L G PL E L H D SGT F QQ VV N LL D II D S E S A K T D TTG A G L D M 60
FGENESH_protB2.fa M T E AI T E AAVA SS EE V S EE R DD L G PL E L H D SGT F QQ VV N LL D II D S E S A K T D TTG A G L D M 60
GENEID_protB2.fa M T E AI T E AAVA SS EE V S EE R DD L G PL E L H D SGT F QQ VV N LL D II D S E S A K T D TTG A G L D M 60
************************************************************
GENSCAN_protB2.fa RK T LA S VIIM E K A TT E P S VVI NT LI R C L Q VP E I STQ RK V N I YN IL Q D II QQ E G E L EE QC V 120
FGENESH_protB2.fa RK T LA S VIIM E K A TT E P S VVI NT LI R C L Q VP E I STQ RK V N I YN IL Q D II QQ E G E L EE QC V 120
GENEID_protB2.fa RK T LA S VIIM E K A TT E P S VVI NT LI R C L Q VP E I STQ RK V N I YN IL Q D II QQ E G E L EE QC V 120
************************************************************
GENSCAN_protB2.fa Q R LVAIA S K E M R E IP E M E GY M K A E VA S D T LVAL S R N H F S LVM Y E L Q HH L K PL N L T DE FVI 180
FGENESH_protB2.fa Q R LVAIA S K E M R E IP E M E GY M K A E VA S D T LVAL S R N H F S LVM Y E L Q HH L K PL N L T DE FVI 180
GENEID_protB2.fa Q R LVAIA S K E M R E IP E M E GY M K A E VA S D T LVAL S R N H F S LVM Y E L Q HH L K PL N L T DE FVI 180
************************************************************
GENSCAN_protB2.fa I T LA K LA NGN AM E T F C E T V Q F Y L KH L EE S V Y PVM T EEE FAL K VFPM Y R Y FV T VWL RH YN P 240
FGENESH_protB2.fa I T LA K LA NGN AM E T F C E T V Q F Y L KH L EE S V Y PVM T EEE FAL K VFPM Y R Y FV T VWL RH YN P 240
GENEID_protB2.fa I T LA K LA NGN AM E T F C E T V Q F Y L KH L EE S V Y PVM T EEE FAL K VFPM Y R Y FV T VWL RH YN P 240
************************************************************
GENSCAN_protB2.fa E V K L G VI K S L K PML G LLLP N DD L R E Q V Y D Y IPLLLA E YQGS L E VL R Q IL E L S V TTNT PVP 300
FGENESH_protB2.fa E V K L G VI K S L K PML G LLLP N DD L R E Q V Y D Y IPLLLA E YQGS L E VL R Q IL E L S V TTNT PVP 300
GENEID_protB2.fa E V K L G VI K S L K PML G LLLP N DD L R E Q V Y D Y IPLLLA E YQGS L E VL R Q IL E L S V TTNT PVP 300
************************************************************
GENSCAN_protB2.fa Q M Q L H T IF T E L H V Q V CN K APA Q H QYSSQN LM E MV H C FVALA R SY P K E LM K FFF SQ M E TN K 360
FGENESH_protB2.fa Q M Q L H T IF T E L H V Q V CN K APA Q H QYSSQN LM E MV H C FVALA R SY P K E LM K FFF SQ M E TN K 360
GENEID_protB2.fa Q M Q L H T IF T E L H V Q V CN K APA Q H QYSSQN LM E MV H C FVALA R SY P K E LM K FFF SQ M E TN K 360
************************************************************
GENSCAN_protB2.fa E AV R V GT L N LI R AIV S A DE P R M S I R AI Y LAI R VV K NT I S D T R S K V R MAIL H II GQ LAL CG 420
FGENESH_protB2.fa E AV R V GT L N LI R AIV S A DE P R M S I R AI Y LAI R VV K NT I S D T R S K V R MAIL H II GQ LAL CG 420
GENEID_protB2.fa E AV R V GT L N LI R AIV S A DE P R M S I R AI Y LAI R VV K NT I S D T R S K V R MAIL H II GQ LAL CG 420
************************************************************
GENSCAN_protB2.fa YQ E R I K G W G L K Y L S V Q L T L STY K L TN RR E K F YQ R D L EE R MV H KV T M D T V K II TSS V SG M T 480
FGENESH_protB2.fa YQ E R I K G W G L K Y L S V Q L T L STY K L TN RR E K F YQ R D L EE R MV H KV T M D T V K II TSS V SG M T 480
GENEID_protB2.fa YQ E R I K G W G L K Y L S V Q L T L STY K L TN RR E K F YQ R D L EE R MV H KV T M D T V K II TSS V SG M T 480
************************************************************
GENSCAN_protB2.fa T E FWV R LL CY IM E T D Y V E AL T PI C I S L TN LA E H Q L H GQ D V D V S VA G K S R Q APPF K N ED K E 540
FGENESH_protB2.fa T E FWV R LL CY IM E T D Y V E AL T PI C I S L TN LA E H Q L H GQ D V D V S VA G K S R QG --------- 531
GENEID_protB2.fa T E FWV R LL CY IM E T D Y V E AL T PI C I S L TN LA E H Q L H GQ D V D V S VA G K S R Q APPF K N ED K E 540
**************************************************... ......
GENSCAN_protB2.fa L Q D K E QG A Q VLL H W S L G AL Q VLM SS P Y K G E G R G IAML N LL R T L SQS IAP S MA D MW E L E IA 600
FGENESH_protB2.fa -----GQSSC PA D WI G ---Q VLM SS P Y K G E G R G IAML N LL R T L SQS IAP S MA D MW E L E IA 583
GENEID_protB2.fa L Q D K E QG A Q VLL H W S L G AL Q VLM SS P Y K G E G R G IAML N LL R T L SQS IAP S MA D MW E L E IA 600
.... :. .* . : *****************************************
GENSCAN_protB2.fa LLV R Y L EE H T E F T W D Q K AW ED K LI Q FL R NS L KK T R GSS W S L R L S K E L NNQ IA S F D S P S L E 660
FGENESH_protB2.fa LLV R Y L EE H T E F T W D Q K AW ED K LI Q FL R NS L KK T R GSS W S L R L S K E L NNQ IA S F D S P S L E 643
GENEID_protB2.fa LLV R Y L EE H T E F T W D Q K AW ED K LI Q FL R NS L KK T R GSS W S L R L S K E L NNQ IA S F D S P S L E 660
************************************************************
GENSCAN_protB2.fa K G FL Y R AL G F T LA TG L E A S K V E VLLL E LL Y K T D YSN D F D S E G VIM C F G L C A R GQ V K T VL N 720
FGENESH_protB2.fa K G FL Y R AL G F T LA TG L E A S K V E VLLL E LL Y K T D YSN D F D S E G VIM C F G L C A R GQ V K T VL N 703
GENEID_protB2.fa K G FL Y R AL G F T LA TG L E A S K V E VLLL E LL Y K T D YSN D F D S E G VIM C F G L C A R GQ V K T VL N 720
************************************************************
GENSCAN_protB2.fa VL H D F EE R I Q E S E QS W Q I S AW RK D H PW RR E T V K S ALMVM YSC VA SYC H P Q LLL N LV D S PI 780
FGENESH_protB2.fa VL H D F EE R I Q E S E QS W Q I S AW RK D H PW RR E T V K S ALMVM YSC VA SYC H P Q LLL N LV D S PI 763
GENEID_protB2.fa VL H D F EE R I Q E S E QS W Q I S AW RK D H PW RR E T V K S ALMVM YSC VA SYC H P Q LLL N LV D S PI 780
************************************************************
GENSCAN_protB2.fa T A K II HH Y V SSCQ ---------------D I C L K MAFM K S VV Q V T K AI NN I K D L ED F H FA Q 825
FGENESH_protB2.fa T A K II HH Y V SSCQ ---------------D I C L K MAFM K S VV Q V T K AI NN I K D L ED F H FA Q 808
GENEID_protB2.fa T A K II HH Y V SSCQ VAP S AAW G D VFW T R L D I C L K MAFM K S VV Q V T K AI NN I K D L ED F H FA Q 840
************* :. ::: .. : ********************************
GENSCAN_protB2.fa K TT L TS IIVAVI K A E P T D N LV S PV R ALAM E AL S H L S K L K PF YST EE NS E LM D I S I H S VI S 885
FGENESH_protB2.fa K TT L TS IIVAVI K A E P T D N LV S PV R ALAM E AL S H L S K L K PF YST EE NS E LM D I S I H S VI S 868
GENEID_protB2.fa K TT L TS IIVAVI K A E P T D N LV S PV R ALAM E AL S H L S K L K PF YST EE NS E LM D I S I H S VI S 900
************************************************************
GENSCAN_protB2.fa L Q LP G ED N E S I K T L Y A N AL SS L E Q LM E S LL Q R Q L D P K G L Q E MV Q I H L K L GQ F GT MV G LIA 945
FGENESH_protB2.fa L Q LP G ED N E S I K T L Y A N AL SS L E Q LM E S LL Q R Q L D P K G L Q E MV Q I H L K L GQ F GT MV G LIA 928
GENEID_protB2.fa L Q LP G ED N E S I K T L Y A N AL SS L E Q LM E S LL Q R Q L D P K G L Q E MV Q ---------------- 944
********************************************
GENSCAN_protB2.fa P CTC D A H Q R T R MA S M N VL SS LL D L H A SQTCS LW G P S K Q K E L E K C K G D L QST D V E K IF C A S 1005
FGENESH_protB2.fa P CTC D A H Q R T R MA S M N VL SS LL D L H A SQTCS LW G P S K Q K E L E K C K G D L QST D V E K IF C A S 988
GENEID_protB2.fa ------------------------------------------------------------
GENSCAN_protB2.fa S R IA K VV C M E F SC DE VV S LI Q K L C E NTG AM N L Q H D K A S V T WIAFFL Q M R A K E L ED K VA E I 1065
FGENESH_protB2.fa S R IA K VV C M E F SC DE VV S LI Q K L C E NTG AM N L Q H D K A S V T WIAFFL Q M R A K E L ED K VA E I 1048
GENEID_protB2.fa -----VV C M E F SC DE VV S LI Q K L C E NTG AM N L Q H D K A S V T WIAFFL Q M R A K E L ED K VA E I 999
*******************************************************
GENSCAN_protB2.fa L S AILV H LPVV D H P E V RR LLI D G ILLLA HHH Q E T IL TS LL R Q PLPM E S H LA E VWLAV S E N 1125
FGENESH_protB2.fa L S AILV H LPVV D H P E V RR LLI D G ILLLA HHH Q E T IL TS LL R Q PLPM E S H LA E VWLAV S E N 1108
GENEID_protB2.fa L S AILV H LPVV D H P E V RR LLI D G ILLLA HHH Q E T IL TS LL R Q PLPM E S H LA E VWLAV S E N 1059
************************************************************
GENSCAN_protB2.fa VPFA R T ML H S LM G R L QS R L S P R I S A TS K A D IW R LAAV D PLM T L CT I H LLI Q K L DE N D K LP 1185
FGENESH_protB2.fa VPFA R T ML H S LM G R L QS R L S P R I S A TS K A D IW R LAAV D PLM T L CT I H LLI Q K L DE N D K LP 1168
GENEID_protB2.fa VPFA R T ML H S LM G R L QS R L S P R I S A TS K A D IW R LAAV D PLM T L CT I H LLI Q K L DE N D K LP 1119
************************************************************
GENSCAN_protB2.fa D FLP D LI YT LLL Q L GSS H RP E AAPPVL K MW K LV H TT PLP EE M N L Q R CS R G R V T I K S M Q LL 1245
FGENESH_protB2.fa D FLP D LI YT LLL Q L GSS H RP E AAPPVL K MW K LV H TT PLP EE M N L Q R CS R G R V T I K S M Q LL 1228
GENEID_protB2.fa D FLP D LI YT LLL Q L GSS H RP E AAPPVL K MW K LV H TT PLP EE M N L Q R CS R G R V T I K S M Q LL 1179
************************************************************
GENSCAN_protB2.fa F KR V K SQ H LA H T L DE Q AVW D LL Q D GGT FL E G V S LLA R L C M Q H V E G H RQ R LA E LVL R G M D S 1305
FGENESH_protB2.fa F KR V K SQ H LA H T L DE Q AVW D LL Q D GGT FL E G V S LLA R L C M Q H V E G H RQ R LA E LVL R G M D S 1288
GENEID_protB2.fa F KR V K SQ H LA H T L DE Q AVW D LL Q D GGT FL E G V S LLA R L C M Q H V E G H RQ R LA E LVL R G M D S 1239
************************************************************
GENSCAN_protB2.fa E VL SC R I SST AV C V E M RH R --------------------------------FM SG PVL YQ 1333
FGENESH_protB2.fa E VL SC R I SST AV C V E M RH R --------------------------------FM SG PVL YQ 1316
GENEID_protB2.fa E VL SC R I SST AV C V E M RH R S H QS ALPLLP R P T LLL R N E PAL G I T A QC PPF Q FM SG PVL YQ 1299
******************* : . :: . . . : ... : . ::.... .*********
GENSCAN_protB2.fa E K LL K PAALLL E K G A D Q EEDE AL R VL S L R AL GN MAL G AP KK V K QY RK VLL E K C L G PL R E P 1393
FGENESH_protB2.fa E K LL K PAALLL E K G A D Q EEDE AL R VL S L R AL GN MAL G AP KK V K QY RK VLL E K C L G PL R E P 1376
GENEID_protB2.fa E K LL K PAALLL E K G A D Q EEDE AL R VL S L R AL GN MAL G AP KK V K QY RK VLL E K C L G PL R E P 1359
************************************************************
GENSCAN_protB2.fa V SNS V T A E G M E AL T K ILA E L R E G D V GSS F D AM S E QC R IFF D N E S E LL R L K AFILF G K LA R 1453
FGENESH_protB2.fa V SNS V T A E G M E AL T K ILA E L R E G D V GSS F D AM S E QC R IFF D N E S E LL R L K AFILF G K LA R 1436
GENEID_protB2.fa V SNS V T A E G M E AL T K ILA E L R E G D V GSS F D AM S E QC R IFF D N E S E LL R L K AFILF G K LA R 1419
************************************************************
GENSCAN_protB2.fa VV G M S KKH FF K G E V KK AWIPLML H SQ D P CSN AA Q V R Y IL G FV SQSG A R CS P RK Q VL GS A G 1513
FGENESH_protB2.fa VV G M S KKH FF K G E V KK AWIPLML H SQ D P CSN AA Q A ------------------------- 1471
GENEID_protB2.fa VV G M S KKH FF K G E V KK AWIPLML H SQ D P CSN AA Q A ------------------------- 1454
**********************************.
GENSCAN_protB2.fa S A C MA T MF QC V H FW G W K S L E H P SG P S D T A T DD K M T VF QTT M CS IL T RKK PAVL Y R FLL E T 1573
FGENESH_protB2.fa --C MA T MF QC V H FW G W K S L E H P SG P S D T A T DD K M T VF QTT M CS IL T RKK PAVL Y R FLL E T 1529
GENEID_protB2.fa --C MA T MF QC V H FW G W K S L E H P SG P S D T A T DD K M T VF QTT M CS IL T RKK PAVL Y R FLL E T 1512
**********************************************************
GENSCAN_protB2.fa MA Y V K NN L S R I R IAA CN LA G IIM K Q M ST H Y L KK L D FPAL R NS L Q E L Q L D P D P G P TG P K G R 1633
FGENESH_protB2.fa MA Y V K NN L S R I R IAA CN LA ----------------------AL Q E L Q L D P D P G ------- 1560
GENEID_protB2.fa MA Y V K NN L S R I R IAA CN LA ----------------------G IIM K Q M S ----------- 1539
******************* . : * :.
GENSCAN_protB2.fa K LAL C L H S E FI H T H A D S VP K A RH C A KR A G K P G LP NCSQSNCQ R NS P SG VP STG E SCY AV Q 1693
FGENESH_protB2.fa --------------------V RR AAL E T -L T VL D SCSQ H G FLA S -P QG M S ---------- 1588
GENEID_protB2.fa ---------------------T H Y L KK L D FPAL R NC E ----------------------- 1555
: . . . * .*.
GENSCAN_protB2.fa N P T R A K AF SGT VVF K LF CG A NG D LI SC PVI K S IAA K Q A 1731
FGENESH_protB2.fa --------------------------------------
GENEID_protB2.fa --------------------------------------
PLEASE NOTE: Showing colors on large alignments is slow. Guide Tree
(
GENEID_protB2.fa:0.03468,
GENSCAN_protB2.fa:-0.00317,
FGENESH_protB2.fa:0.02899);
Cladogram
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