atInspector Result MatInspector Release public domain January 2000 Fri Mar 14 10:16:58 2003 Solution parameters: ~~~~~~~~~~~~~~~~~~~~ sequence file: regiopromotora_1.seq core sim: 0.75 matrix sim: 0.85 Explanation for column output: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -> Matrix positions correspond to sense strand numbering, but all sequences are given in 5'-3' direction. -> n/a in column 'core simil.' indicates, that no core search was conducted. -> Capital letters within the sequence indicate the core string. Matrix | Position(str)| Core | Matrix | Sequence Name | of Matrix | Simil. | Simil. | ----------------------------------------------------------------------- Inspecting sequence regiopromotora_1 [?] (1 - 190): V$AP1_Q4 | 1 (-) | 1.000 | 0.936 | gtTGACtcaag V$AP1_Q2 | 1 (-) | 1.000 | 0.930 | gtTGACtcaag V$AP1FJ_Q2 | 1 (-) | 1.000 | 0.932 | gtTGACtcaag V$AP1_C | 2 (+) | 1.000 | 0.983 | tTGAGTCAa V$AP1_C | 2 (-) | 0.981 | 0.974 | tTGACTCAa V$MEF2_02 | 4 (+) | 1.000 | 0.859 | gagtcaactctaAATAgtggca V$MEF2_03 | 4 (+) | 1.000 | 0.871 | gagtcaactctaaATAGtggca V$TCF11_01 | 6 (+) | 1.000 | 0.855 | GTCAactctaaat V$NF1_Q6 | 18 (+) | 1.000 | 0.850 | tagTGGCagaaattttgt V$SRY_02 | 28 (-) | 1.000 | 0.858 | cttgACAAaatt V$AP1_Q2 | 29 (-) | 1.000 | 0.872 | ctTGACaaaat V$AP1FJ_Q2 | 29 (-) | 1.000 | 0.903 | ctTGACaaaat V$AP1_Q4 | 29 (-) | 1.000 | 0.862 | ctTGACaaaat V$TCF11_01 | 34 (+) | 1.000 | 0.871 | GTCAaggtgaagt V$DELTAEF1_01 | 35 (-) | 1.000 | 0.973 | cttcACCTtga V$NF1_Q6 | 52 (+) | 1.000 | 0.920 | tctTGGCtgctttggtgg V$TCF11_01 | 66 (-) | 1.000 | 0.882 | GTCAagttaccac V$NKX25_01 | 71 (-) | 1.000 | 0.880 | tcAAGTt V$AP1_Q4 | 73 (+) | 1.000 | 0.919 | ctTGACtcata V$AP1FJ_Q2 | 73 (+) | 1.000 | 0.924 | ctTGACtcata V$AP1_Q2 | 73 (+) | 1.000 | 0.918 | ctTGACtcata V$AP1_C | 74 (-) | 1.000 | 0.989 | aTGAGTCAa V$AP1_C | 74 (+) | 0.981 | 0.977 | tTGACTCAt V$TCF11_01 | 78 (+) | 0.798 | 0.875 | CTCAtaatagcac V$NKX25_02 | 80 (+) | 1.000 | 0.907 | caTAATag V$CMYB_01 | 87 (-) | 1.000 | 0.906 | gtggatttctGTTGgtgc V$VMYB_01 | 89 (+) | 0.820 | 0.879 | accAACAgaa V$VMYB_02 | 89 (+) | 0.784 | 0.871 | accAACAga V$GFI1_01 | 90 (+) | 1.000 | 0.878 | ccaacagaAATCcacactcttcct V$MZF1_01 | 100 (-) | 0.779 | 0.858 | agtGTGGa V$TCF11_01 | 108 (-) | 1.000 | 0.873 | GTCAgtgaggaag V$MZF1_01 | 110 (-) | 0.779 | 0.858 | agtGAGGa V$AP1FJ_Q2 | 115 (+) | 1.000 | 0.908 | acTGACcctct V$AP1_Q2 | 115 (+) | 1.000 | 0.895 | acTGACcctct V$RORA1_01 | 116 (-) | 1.000 | 0.865 | tttagagGGTCag V$TATA_C | 121 (+) | 0.886 | 0.914 | ccTCTAAAAt V$GATA1_02 | 131 (+) | 1.000 | 0.891 | agtctGATAtttcc V$GATA1_03 | 131 (+) | 1.000 | 0.873 | agtctGATAtttcc V$GATA1_04 | 132 (+) | 1.000 | 0.922 | gtctGATAtttcc V$LMO2COM_02 | 134 (+) | 1.000 | 0.898 | ctGATAttt V$GATA_C | 135 (+) | 0.868 | 0.894 | tGATATttccc V$NFAT_Q6 | 137 (-) | 1.000 | 0.918 | gtgggGAAAtat V$IK1_01 | 137 (-) | 1.000 | 0.850 | agtgGGGAaatat V$CEBPB_01 | 137 (-) | 0.986 | 0.951 | aagtgggGAAAtat V$IK2_01 | 138 (-) | 1.000 | 0.920 | agtgGGGAaata V$MZF1_01 | 142 (-) | 1.000 | 1.000 | agtGGGGa V$NKX25_01 | 146 (-) | 1.000 | 0.884 | aaAAGTg V$TATA_C | 148 (-) | 0.928 | 0.885 | ttTTTAAAAg V$TATA_C | 148 (+) | 0.928 | 0.879 | ctTTTAAAAa V$FREAC7_01 | 150 (+) | 0.764 | 0.853 | tttaaaAAAAcaattt V$HFH8_01 | 152 (-) | 1.000 | 0.903 | aatTGTTttttta V$HFH3_01 | 152 (-) | 1.000 | 0.930 | aatTGTTttttta V$HNF3B_01 | 152 (-) | 1.000 | 0.950 | caaatTGTTttttta V$HFH2_01 | 153 (-) | 1.000 | 0.979 | aatTGTTttttt V$HFH1_01 | 153 (-) | 1.000 | 0.882 | aattGTTTtttt V$SRY_02 | 155 (+) | 1.000 | 0.952 | aaaaACAAtttg V$SOX5_01 | 156 (+) | 1.000 | 0.983 | aaaaCAATtt V$BRN2_01 | 158 (-) | 1.000 | 0.866 | gaaatttcAAATtgtt V$BRN2_01 | 159 (+) | 1.000 | 0.858 | acaatttgAAATttca V$OCT1_06 | 160 (+) | 0.889 | 0.891 | caatttgaaATTTc V$TST1_01 | 164 (+) | 1.000 | 0.864 | ttgaAATTtcagttt V$OCT1_06 | 166 (-) | 0.889 | 0.879 | aaaactgaaATTTc V$IRF2_01 | 168 (-) | 1.000 | 0.908 | gaaaactGAAAtt V$IRF1_01 | 168 (-) | 1.000 | 0.927 | gaaaactGAAAtt V$VMYB_01 | 171 (-) | 0.876 | 0.885 | gaaAACTgaa V$IRF1_01 | 175 (-) | 1.000 | 0.879 | gcaaacaGAAAac V$IRF2_01 | 175 (-) | 1.000 | 0.865 | gcaaacaGAAAac A total of 200 basepairs was scanned.