BI517820 Note Best alignment is between forward est and forward genome, and splice sites imply forward gene Exon 40 95.5 141495 141538 AC090953 1 43 gi +Intron -20 0.0 141539 145158 AC090953 Exon 150 100.0 145159 145308 AC090953 44 193 gi +Intron -20 0.0 145309 146977 AC090953 Exon 125 99.2 146978 147104 AC090953 194 320 gi +Intron -20 0.0 147105 147691 AC090953 Exon 64 100.0 147692 147755 AC090953 321 384 gi +Intron -20 0.0 147756 162374 AC090953 Exon 105 99.1 162375 162481 AC090953 385 491 gi +Intron -20 0.0 162482 170888 AC090953 Exon 119 93.1 170889 171030 AC090953 492 633 gi +Intron -20 0.0 171031 177658 AC090953 Exon 132 89.6 177659 177835 AC090953 634 808 gi Span 616 96.0 141495 177836 AC090953 1 809 gi Segment 23 95.8 141495 141518 AC090953 1 24 gi Segment 19 100.0 141520 141538 AC090953 25 43 gi Segment 150 100.0 145159 145308 AC090953 44 193 gi Segment 125 99.2 146978 147104 AC090953 194 320 gi Segment 64 100.0 147692 147755 AC090953 321 384 gi Segment 105 99.1 162375 162481 AC090953 385 491 gi Segment 36 95.0 170889 170928 AC090953 492 531 gi Segment 51 98.1 170930 170982 AC090953 532 584 gi Segment 1 100.0 170983 170983 AC090953 586 586 gi Segment 17 94.7 170984 171002 AC090953 588 606 gi Segment 7 100.0 171004 171010 AC090953 607 613 gi Segment 13 100.0 171012 171024 AC090953 614 626 gi Segment 6 100.0 171025 171030 AC090953 628 633 gi Segment 2 100.0 177659 177660 AC090953 634 635 gi Segment 25 100.0 177661 177685 AC090953 637 661 gi Segment 15 100.0 177686 177700 AC090953 663 677 gi Segment 15 94.1 177702 177718 AC090953 678 694 gi Segment 16 100.0 177720 177735 AC090953 695 710 gi Segment 9 100.0 177736 177744 AC090953 712 720 gi Segment 7 88.9 177745 177753 AC090953 722 730 gi Segment 13 100.0 177755 177767 AC090953 731 743 gi Segment 3 100.0 177769 177771 AC090953 744 746 gi Segment 12 83.3 177773 177790 AC090953 747 764 gi Segment 20 91.7 177792 177815 AC090953 765 788 gi Segment 7 100.0 177816 177822 AC090953 790 796 gi Segment 12 100.0 177824 177835 AC090953 797 808 gi AC090953 vs gi: AC090953 141495 CTTGAGCCCAGGGCGACGGTCAGCTTGTTAATTCCTGGCTGCAGgtaca. 141538 |||||||||| ||||||||||||| |||||||||||||||||||>>>>> gi 1 CTTGAGCCCANGGCGACGGTCAGC-TGTTAATTCCTGGCTGCAG...... 43 AC090953 141538 .....tgcagGAACTTTGTGAGAATTTTAATGCATGGAAAAGCTGTCCAT 145198 3620 >>>>>|||||||||||||||||||||||||||||||||||||||| gi 43 ..........GAACTTTGTGAGAATTTTAATGCATGGAAAAGCTGTCCAT 83 AC090953 145199 GTTCCAACTGCTGTACATCCAAAAGTCTCAGTGTAATAGCAGGACCAAAA 145248 |||||||||||||||||||||||||||||||||||||||||||||||||| gi 84 GTTCCAACTGCTGTACATCCAAAAGTCTCAGTGTAATAGCAGGACCAAAA 133 AC090953 145249 TATTCTGTCAATCAGCTGACCATATACTTAATGACTCCTAAAATCTCGTG 145298 |||||||||||||||||||||||||||||||||||||||||||||||||| gi 134 TATTCTGTCAATCAGCTGACCATATACTTAATGACTCCTAAAATCTCGTG 183 AC090953 145299 GACTTCTAAGgtaag......cccagAAAGCGCCATGGCCTGTGCTGCTG 147001 ||||||||||>>>>> 1669 >>>>>|||||||||||||||||||||||| gi 184 GACTTCTAAG................AAAGCGCCATGGCCTGTGCTGCTG 217 AC090953 147002 TTATGATTCCTGGGTTGTTGCGGTGCTCTGTTGGAGCCATCCGTATTGAG 147051 |||||||||||||||||||||||||||||||||||||||||||||||||| gi 218 TTATGATTCCTGGGTTGTTGCGGTGCTCTGTTGGAGCCATCCGTATTGAG 267 AC090953 147052 GCTGCGTCACTGAGATTGACACTCAGCACTTTGCGCCACCTTACTCTAAC 147101 |||||||||||||||||||||||||||||||||||||| ||||||||||| gi 268 GCTGCGTCACTGAGATTGACACTCAGCACTTTGCGCCATCTTACTCTAAC 317 AC090953 147102 CAGgtgag.....taaagCATAATGAAATCCAAAAGGAAAACTGATCACA 147723 |||>>>>> 587 >>>>>|||||||||||||||||||||||||||||||| gi 318 CAG...............CATAATGAAATCCAAAAGGAAAACTGATCACA 352 AC090953 147724 TGGAGAGAACTGCAAGTGTCCTTCGACGGGAGgtttg.......tttagA 162375 ||||||||||||||||||||||||||||||||>>>>> 14619 >>>>>| gi 353 TGGAGAGAACTGCAAGTGTCCTTCGACGGGAG.................A 385 AC090953 162376 TTGTGTCAGCAGCTAAGGTGTGTGGAGCTGCCAGTGAGTCACCGTCAGTG 162425 ||||| |||||||||||||||||||||||||||||||||||||||||||| gi 386 TTGTGGCAGCAGCTAAGGTGTGTGGAGCTGCCAGTGAGTCACCGTCAGTG 435 AC090953 162426 AAGAGCCTCCGCTTGCTTGTTGCTGATCAAGACTTTTCCTTTAAAGCTGG 162475 |||||||||||||||||||||||||||||||||||||||||||||||||| gi 436 AAGAGCCTCCGCTTGCTTGTTGCTGATCAAGACTTTTCCTTTAAAGCTGG 485 AC090953 162476 CCAGTGgtaag......tttagGGTTGATTTCTTTATTCCAGGAGTCTCT 170916 ||||||>>>>> 8407 >>>>>|||||||||||||||||||||||||||| gi 486 CCAGTG................GGTTGATTTCTTTATTCCAGGAGTCTCT 519 AC090953 170917 GTGGTTGGTGGGTTTTCAATATGCTCCAGTCCCAGACTGCTAGAACAAGA 170966 |||| ||| ||| |||||||||||||||||||||||||| |||||||||| gi 520 GTGGGTGGAGGG-TTTCAATATGCTCCAGTCCCAGACTGGTAGAACAAGA 568 AC090953 170967 GAGAGTGATAGAATTG-G-CAGTGAAATATACGAACCACCCTCCTGCCCT 171014 |||||||||||||||| | |||||||||||||||| || ||||||| ||| gi 569 GAGAGTGATAGAATTGTGCCAGTGAAATATACGAAACA-CCTCCTG-CCT 616 AC090953 171015 CTGGGTTCAC-AATACGgtaag......cttagTG-TACACTTGACTGTG 177674 |||||||||| ||||||>>>>> 6628 >>>>>|| |||||||||||||| gi 617 CTGGGTTCACAAATACG................TGTTACACTTGACTGTG 650 AC090953 177675 AAGTGGCTGTG-AGAGTGGGTGGAGAGTTCTTCTTTGACCCTCAGCCTGC 177723 ||||||||||| ||||||||||||||| |||||||||| |||||| |||| gi 651 AAGTGGCTGTGAAGAGTGGGTGGAGAG-TCTTCTTTGAGCCTCAG-CTGC 698 AC090953 177724 GGATGCCTCTAG-AAACCTCGT-GTTGATTGCAGGAGGAGTCGGAATTAA 177771 |||||||||||| ||||||||| ||||| ||| ||||||||||||| ||| gi 699 GGATGCCTCTAGAAAACCTCGTGGTTGACTGC-GGAGGAGTCGGAA-TAA 746 AC090953 177772 CCCTCTGCTTTCCATCCTGCGGCACGCAGCAGATCTCCTCAGAG-AGCAG 177820 |||||| |||| ||||| |||||||| |||||||||||||| ||||| gi 747 -CCTCTGTTTTCATTCCTG-GGCACGCAAGAGATCTCCTCAGAGAAGCAG 794 AC090953 177821 GCAAACAAAAGAAAT 177835 || |||||||||||| gi 795 GC-AACAAAAGAAAT 808 Alignment Score: 616