AA625207 Note Best alignment is between reversed est and forward genome, but splice sites imply REVERSED GENE Exon 239 100.0 136624 136862 AC090953 1 239 gi -Intron -20 0.0 136863 140187 AC090953 Exon 75 100.0 140188 140262 AC090953 240 314 gi -Intron -20 0.0 140263 140801 AC090953 Exon 172 97.8 140802 140981 AC090953 315 494 gi Span 447 99.2 136624 140982 AC090953 1 495 gi Segment 239 100.0 136624 136862 AC090953 1 239 gi Segment 75 100.0 140188 140262 AC090953 240 314 gi Segment 172 97.8 140802 140981 AC090953 315 494 gi AC090953 vs gi: AC090953 136624 CATGTTATGGACTTGCTTCCTGAAGATGATATCAGCAGTTGATAGAAAGA 136673 |||||||||||||||||||||||||||||||||||||||||||||||||| gi 1 CATGTTATGGACTTGCTTCCTGAAGATGATATCAGCAGTTGATAGAAAGA 50 AC090953 136674 ATCCACACTCTTACAGAACAGCAAATCATAAATGGTTGTCTCTGTGAAGC 136723 |||||||||||||||||||||||||||||||||||||||||||||||||| gi 51 ATCCACACTCTTACAGAACAGCAAATCATAAATGGTTGTCTCTGTGAAGC 100 AC090953 136724 CAGTAGCTTTGCATTCGATATTTCTATCTGGGCTCATTCCAAATGTTCAG 136773 |||||||||||||||||||||||||||||||||||||||||||||||||| gi 101 CAGTAGCTTTGCATTCGATATTTCTATCTGGGCTCATTCCAAATGTTCAG 150 AC090953 136774 GATTTGGATTCCTGAAGGCTTCTTCAGCATTTAACTAATTCTTTGTTGGC 136823 |||||||||||||||||||||||||||||||||||||||||||||||||| gi 151 GATTTGGATTCCTGAAGGCTTCTTCAGCATTTAACTAATTCTTTGTTGGC 200 AC090953 136824 TGAAGGGGCTGGGACTGTTTCTCCACACACAAACTGATCctaag...... 136862 |||||||||||||||||||||||||||||||||||||||<<<<< 3325 gi 201 TGAAGGGGCTGGGACTGTTTCTCCACACACAAACTGATC........... 239 AC090953 136862 cttacTTTGTCATAAATCACTTTTATAATGAGAGAGCAGCTAGGACACGT 140232 <<<<<||||||||||||||||||||||||||||||||||||||||||||| gi 239 .....TTTGTCATAAATCACTTTTATAATGAGAGAGCAGCTAGGACACGT 284 AC090953 140233 TGCCACGTCTTCCCCATTCTCCAAATCTTCctaca.....gttacCTTGG 140806 ||||||||||||||||||||||||||||||<<<<< 539 <<<<<||||| gi 285 TGCCACGTCTTCCCCATTCTCCAAATCTTC...............CTTGG 319 AC090953 140807 TGATGGAGAAGTTATCTCCACATGGGCAGGGATAGAAATACGTCTCCGAG 140856 |||||||||||||||||||||||||||||||||||||||||||||||||| gi 320 TGATGGAGAAGTTATCTCCACATGGGCAGGGATAGAAATACGTCTCCGAG 369 AC090953 140857 TCCTCGTCATATTGGAAGTCCTCGATTTCCACCTCGTCATGAAACACTGC 140906 |||||||||||||||||||||||||||||||||||||||||||||||||| gi 370 TCCTCGTCATATTGGAAGTCCTCGATTTCCACCTCGTCATGAAACACTGC 419 AC090953 140907 CATGGTCAGCGGGGGTGGCCGAAGGGGTAACGCCCCAGCAGTCCGAGGCC 140956 |||||||||||||||||||||||||||||||||||||||||||||||||| gi 420 CATGGTCAGCGGGGGTGGCCGAAGGGGTAACGCCCCAGCAGTCCGAGGCC 469 AC090953 140957 AGCTCCGAGGGTTTAACTTCGCCGG 140981 ||||| ||||||||||||| | || gi 470 AGCTCTGAGGGTTTAACTTTTCGGG 494 Alignment Score: 447